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  5. Mp5g12560.1

Mp5g12560.1 (PUB13, ATPUB13)


Aliases : PUB13, ATPUB13

Description : E3 ubiquitin ligase (PUB)


Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp5g12560.1

Target Alias Description ECC score Gene Family Method Actions
AT1G29340 ATPUB17, PUB17 plant U-box 17 0.05 OrthoFinder output from all 47 species
Adi_g026489 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g102535 ATPUB17, PUB17 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g04770 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g05159 PUB12, AtPUB12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g02329 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g13982 PUB13, ATPUB13 E3 ubiquitin ligase *(PUB8) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g15449 PUB18, ATPUB18 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05074 PUB14, ATPUB14 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07604 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000295 No alias not classified & original description: CDS=1-2304 0.03 OrthoFinder output from all 47 species
Azfi_s0070.g036784 PUB13, ATPUB13 not classified & original description: CDS=1-531 0.03 OrthoFinder output from all 47 species
Azfi_s0110.g045492 ATPUB17, PUB17 not classified & original description: CDS=1-2295 0.02 OrthoFinder output from all 47 species
Cba_g06960 PUB14, ATPUB14 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g31463 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G103500.1 PUB13, ATPUB13,... not classified & original description: pacid=50631830... 0.02 OrthoFinder output from all 47 species
Ceric.19G008100.1 PUB25, Ceric.19G008100 not classified & original description: pacid=50576706... 0.02 OrthoFinder output from all 47 species
Ceric.34G048100.1 Ceric.34G048100 E3 ubiquitin ligase & original description:... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020943.20 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g01449 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g35977 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g39000 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g01430 PUB13, ATPUB13 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g06164 ATPUB17, PUB17 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01006481001 PUB8, B80 U-box domain-containing protein 8 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01009347001 No alias U-box domain-containing protein 4 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01016225001 PUB14, ATPUB14 U-box domain-containing protein 14 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os06g01304.1 PUB14, ATPUB14,... E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Msp_g31758 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g14682 ATPUB45, PUB45 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g15817 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g17320 PUB13, ATPUB13 E3 ubiquitin ligase *(PUB15) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g37794 PUB13, ATPUB13 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g03488 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g24080 No alias E3 ubiquitin ligase *(PUB15) & original description: none 0.02 OrthoFinder output from all 47 species
Smo415326 ATPUB17, PUB17 U-box domain-containing protein 1 OS=Medicago truncatula 0.06 OrthoFinder output from all 47 species
Solyc02g072080.1.1 ATPUB17, PUB17,... U-box domain-containing protein 17 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc12g088360.2.1 Solyc12g088360 U-box domain-containing protein 4 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Spa_g07376 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g08558 ATPUB17, PUB17 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g07352 ATPUB17, PUB17 E3 ubiquiTin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e036734_P001 PUB14, ATPUB14,... E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
InterPro domains Description Start Stop
IPR000225 Armadillo 395 434
IPR000225 Armadillo 560 594
IPR000225 Armadillo 478 516
IPR003613 Ubox_domain 268 338
No external refs found!