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  5. Mp5g07730.1

Mp5g07730.1


Description : Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana (sp|q3edf8|ppr28_arath : 191.0)


Gene families : OG0001104 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001104_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp5g07730.1

Target Alias Description ECC score Gene Family Method Actions
Aev_g06759 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g06419 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.26G072600.1 EMB2750, Ceric.26G072600 not classified & original description: pacid=50599096... 0.02 OrthoFinder output from all 47 species
Gb_32462 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.02 OrthoFinder output from all 47 species
Lfl_g05606 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_132279g0010 No alias Pentatricopeptide repeat-containing protein At5g02860... 0.05 OrthoFinder output from all 47 species
MA_89328g0010 No alias Pentatricopeptide repeat-containing protein At5g66631... 0.02 OrthoFinder output from all 47 species
Pir_g08385 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g32274 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0206.g025753 No alias not classified & original description: CDS=1-1929 0.02 OrthoFinder output from all 47 species
Sam_g10479 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g25243 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27171 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g008480.4.1 Solyc01g008480 Pentatricopeptide repeat-containing protein At2g01390... 0.02 OrthoFinder output from all 47 species
Spa_g09030 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g11567 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 113 146
IPR002885 Pentatricopeptide_repeat 289 322
IPR002885 Pentatricopeptide_repeat 328 377
IPR002885 Pentatricopeptide_repeat 152 201
IPR002885 Pentatricopeptide_repeat 212 271
No external refs found!