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  5. Mp5g02830.1

Mp5g02830.1


Description : component LSm6 of U6-associated LSm accessory ribonucleoprotein complex


Gene families : OG0002787 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002787_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp5g02830.1
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AT3G59810 No alias Small nuclear ribonucleoprotein family protein 0.02 OrthoFinder output from all 47 species
Adi_g019036 No alias component *(LSm6) of U6-associated LSm accessory... 0.04 OrthoFinder output from all 47 species
Als_g63045 RUXF component *(Sm-F) of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
Ceric.1Z177500.1 Ceric.1Z177500 component *(LSm6) of U6-associated LSm accessory... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000944.19 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001355.5 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.03 OrthoFinder output from all 47 species
Cre03.g151750 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.04 OrthoFinder output from all 47 species
Cre05.g241300 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.05 OrthoFinder output from all 47 species
LOC_Os02g08090.1 LOC_Os02g08090 component Sm-F of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
LOC_Os02g30624.2 LOC_Os02g30624 component LSm6 of U6-associated LSm accessory... 0.02 OrthoFinder output from all 47 species
LOC_Os04g31950.1 LOC_Os04g31950 component LSm6 of U6-associated LSm accessory... 0.06 OrthoFinder output from all 47 species
LOC_Os11g43620.1 LOC_Os11g43620 component Sm-F of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
Nbi_g30602 RUXF component *(Sm-F) of U1/U2/U4/U5-associated Sm accessory... 0.01 OrthoFinder output from all 47 species
Pp3c12_17630V3.1 RUXF, Pp3c12_17630 small nuclear ribonucleoprotein F 0.03 OrthoFinder output from all 47 species
Pp3c18_1280V3.1 Pp3c18_1280 Small nuclear ribonucleoprotein family protein 0.02 OrthoFinder output from all 47 species
Pp3c22_1090V3.1 Pp3c22_1090 Small nuclear ribonucleoprotein family protein 0.01 OrthoFinder output from all 47 species
Pp3c4_14270V3.1 RUXF, Pp3c4_14270 small nuclear ribonucleoprotein F 0.02 OrthoFinder output from all 47 species
Smo268399 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.03 OrthoFinder output from all 47 species
Solyc10g078450.2.1 Solyc10g078450 component LSm6 of U6-associated LSm accessory... 0.04 OrthoFinder output from all 47 species
Zm00001e025108_P001 RUXF, Zm00001e025108 component Sm-F of U1/U2/U4/U5-associated Sm accessory... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016849 phosphorus-oxygen lyase activity IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0033897 ribonuclease T2 activity IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 22 86
No external refs found!