Mp4g18960.1

Description : DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis thaliana (sp|q9lu46|rh35_arath : 914.0)

Gene families : OG0005520 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005520_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Mp4g18960.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00062p00113470	evm_27.TU.AmTr_v1...	DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Adi_g082736	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g14661	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g12117	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021012.34	No alias	DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Cre07.g334200	No alias	DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Dac_g11073	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
LOC_Os02g05660.1	LOC_Os02g05660	DEAD-box ATP-dependent RNA helicase 35A OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
Sam_g09581	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g09869	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005681	spliceosomal complex	IEP	HCCA
CC	GO:0005789	endoplasmic reticulum membrane	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
CC	GO:0018995	host cellular component	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
CC	GO:0033643	host cell part	IEP	HCCA
CC	GO:0033646	host intracellular part	IEP	HCCA
CC	GO:0033647	host intracellular organelle	IEP	HCCA
CC	GO:0033648	host intracellular membrane-bounded organelle	IEP	HCCA
CC	GO:0042025	host cell nucleus	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	385	492
IPR011545	DEAD/DEAH_box_helicase_dom	170	349

External Links

No external refs found!