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  5. Mp4g15330.1

Mp4g15330.1


Description : component SYF1/MAC9 of non-snRNP MOS4-associated complex


Gene families : OG0005359 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005359_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp4g15330.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00060p00216060 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
AT5G28740 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g108555 No alias component *(SYF1/MAC9) of MAC spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Aev_g05498 No alias component *(SYF1/MAC9) of MAC spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Aop_g01827 No alias component *(SYF1/MAC9) of MAC spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Ceric.09G080100.1 Ceric.09G080100 component *(SYF1/MAC9) of MAC spliceosome-associated... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001206.15 No alias RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Cre12.g513500 No alias RNA processing.RNA splicing.spliceosome-associated... 0.06 OrthoFinder output from all 47 species
Dac_g11758 No alias component *(SYF1/MAC9) of MAC spliceosome-associated... 0.02 OrthoFinder output from all 47 species
GSVIVT01006714001 No alias RNA processing.RNA splicing.spliceosome-associated... 0.04 OrthoFinder output from all 47 species
Gb_19093 No alias component SYF1/MAC9 of non-snRNP MOS4-associated complex 0.03 OrthoFinder output from all 47 species
LOC_Os07g44970.1 LOC_Os07g44970 component SYF1/MAC9 of non-snRNP MOS4-associated complex 0.04 OrthoFinder output from all 47 species
Lfl_g02367 No alias component *(SYF1/MAC9) of MAC spliceosome-associated... 0.03 OrthoFinder output from all 47 species
MA_10437082g0020 No alias component SYF1/MAC9 of non-snRNP MOS4-associated complex 0.04 OrthoFinder output from all 47 species
Ppi_g03970 No alias component *(SYF1/MAC9) of MAC spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Solyc01g086990.3.1 Solyc01g086990 component SYF1/MAC9 of non-snRNP MOS4-associated complex 0.08 OrthoFinder output from all 47 species
Spa_g14889 No alias component *(SYF1/MAC9) of MAC spliceosome-associated... 0.04 OrthoFinder output from all 47 species
Zm00001e010869_P001 Zm00001e010869 component SYF1/MAC9 of non-snRNP MOS4-associated complex 0.04 OrthoFinder output from all 47 species
Zm00001e035711_P001 Zm00001e035711 component SYF1/MAC9 of non-snRNP MOS4-associated complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
BP GO:0009143 nucleoside triphosphate catabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
BP GO:0046434 organophosphate catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0047429 nucleoside triphosphate diphosphatase activity IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901292 nucleoside phosphate catabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!