Mp4g14340.1 (RNA_POL_II_LSRNA_POL_I...)

Aliases : RNA_POL_II_LSRNA_POL_II_LS, NRPB1, RPB1, RNA_POL_II_LS

Description : subunit 1 of Pol II RNA polymerase

Gene families : OG0003577 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003577_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Mp4g14340.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00152770	RNA_POL_II_LSRNA_...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.04	OrthoFinder output from all 47 species
AT4G35800	RNA_POL_II_LSRNA_...	RNA polymerase II large subunit	0.04	OrthoFinder output from all 47 species
Adi_g039693	RNA_POL_II_LSRNA_...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g06184	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.05	OrthoFinder output from all 47 species
Ala_g17287	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.02	OrthoFinder output from all 47 species
Aop_g00820	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.03	OrthoFinder output from all 47 species
Ceric.19G033900.1	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000241.15	RNA_POL_II_LSRNA_...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.02	OrthoFinder output from all 47 species
Cre16.g680900	RNA_POL_II_LSRNA_...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.02	OrthoFinder output from all 47 species
Dcu_g02060	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.02	OrthoFinder output from all 47 species
Dde_g04017	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.02	OrthoFinder output from all 47 species
Ehy_g17809	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.03	OrthoFinder output from all 47 species
GSVIVT01008740001	RNA_POL_II_LSRNA_...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.02	OrthoFinder output from all 47 species
Gb_06029	RNA_POL_II_LSRNA_...	subunit 1 of Pol II RNA polymerase	0.03	OrthoFinder output from all 47 species
Gb_33197	RNA_POL_II_LSRNA_...	subunit 1 of Pol II RNA polymerase	0.04	OrthoFinder output from all 47 species
MA_8544g0010	RNA_POL_II_LSRNA_...	subunit 1 of Pol II RNA polymerase	0.03	OrthoFinder output from all 47 species
Nbi_g12702	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.03	OrthoFinder output from all 47 species
Ore_g27265	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.04	OrthoFinder output from all 47 species
Pnu_g11469	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014794	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.02	OrthoFinder output from all 47 species
Sam_g30215	No alias	component *(NRPB1) of RNA polymerase II complex &...	0.04	OrthoFinder output from all 47 species
Smo110201	RNA_POL_II_LSRNA_...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.04	OrthoFinder output from all 47 species
Spa_g08443	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.02	OrthoFinder output from all 47 species
Tin_g05249	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006366	transcription by RNA polymerase II	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006914	autophagy	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	HCCA
BP	GO:0061919	process utilizing autophagic mechanism	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
CC	GO:1902554	serine/threonine protein kinase complex	IEP	HCCA
CC	GO:1902911	protein kinase complex	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA
CC	GO:1990316	Atg1/ULK1 kinase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007083	RNA_pol_Rpb1_4	713	818
IPR007081	RNA_pol_Rpb1_5	825	1414
IPR000684	RNA_pol_II_repeat_euk	1664	1677
IPR000684	RNA_pol_II_repeat_euk	1594	1607
IPR000684	RNA_pol_II_repeat_euk	1734	1747
IPR000684	RNA_pol_II_repeat_euk	1706	1719
IPR000684	RNA_pol_II_repeat_euk	1650	1663
IPR000684	RNA_pol_II_repeat_euk	1692	1705
IPR000684	RNA_pol_II_repeat_euk	1748	1761
IPR000684	RNA_pol_II_repeat_euk	1755	1768
IPR000684	RNA_pol_II_repeat_euk	1608	1621
IPR000684	RNA_pol_II_repeat_euk	1678	1691
IPR000684	RNA_pol_II_repeat_euk	1622	1635
IPR000684	RNA_pol_II_repeat_euk	1741	1754
IPR000684	RNA_pol_II_repeat_euk	1538	1551
IPR000684	RNA_pol_II_repeat_euk	1552	1565
IPR000684	RNA_pol_II_repeat_euk	1580	1593
IPR000684	RNA_pol_II_repeat_euk	1566	1579
IPR000684	RNA_pol_II_repeat_euk	1636	1649
IPR000684	RNA_pol_II_repeat_euk	1727	1740
IPR007066	RNA_pol_Rpb1_3	524	687
IPR007080	RNA_pol_Rpb1_1	14	350
IPR007075	RNA_pol_Rpb1_6	891	1075
IPR000722	RNA_pol_asu	352	520
IPR007073	RNA_pol_Rpb1_7	1160	1293

External Links

No external refs found!

Mp4g14340.1 (RNA_POL_II_LSRNA_POL_I...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation