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Description : mRNA decay factor (PAT1)
Gene families : OG0002686 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002686_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Mp4g14040.1 | |
| Cluster | HCCA: Cluster_56 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00155p00028780 | evm_27.TU.AmTr_v1... | Protein PAT1 homolog OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
| AT1G79090 | No alias | FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... | 0.04 | OrthoFinder output from all 47 species | |
| AT4G14990 | No alias | Topoisomerase II-associated protein PAT1 | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g11197 | No alias | mRNA decay factor *(PAT1) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.08G003100.1 | Ceric.08G003100 | mRNA decay factor *(PAT1) & original description:... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.32G051000.1 | Ceric.32G051000 | mRNA decay factor *(PAT1) & original description:... | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g05032 | No alias | mRNA decay factor *(PAT1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01015721001 | No alias | Protein PAT1 homolog 1 OS=Arabidopsis thaliana | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01020437001 | No alias | No description available | 0.03 | OrthoFinder output from all 47 species | |
| Gb_36345 | No alias | mRNA decay factor (PAT1) | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os01g56300.1 | LOC_Os01g56300 | mRNA decay factor (PAT1) | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os02g31220.2 | LOC_Os02g31220 | mRNA decay factor (PAT1) | 0.02 | OrthoFinder output from all 47 species | |
| Len_g12300 | No alias | mRNA decay factor *(PAT1) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| MA_10426858g0010 | No alias | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g16038 | No alias | mRNA decay factor *(PAT1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0010.g004917 | No alias | mRNA decay factor *(PAT1) & original description: CDS=1-2328 | 0.02 | OrthoFinder output from all 47 species | |
| Smo165728 | No alias | Protein PAT1 homolog OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
| Solyc05g016240.4.1 | Solyc05g016240 | mRNA decay factor (PAT1) | 0.04 | OrthoFinder output from all 47 species | |
| Solyc12g006420.2.1 | Solyc12g006420 | mRNA decay factor (PAT1) | 0.02 | OrthoFinder output from all 47 species | |
| Solyc12g017260.2.1 | Solyc12g017260 | mRNA decay factor (PAT1) | 0.05 | OrthoFinder output from all 47 species | |
| Spa_g26403 | No alias | mRNA decay factor *(PAT1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e019701_P001 | Zm00001e019701 | mRNA decay factor (PAT1) | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003682 | chromatin binding | IEP | HCCA |
| MF | GO:0004519 | endonuclease activity | IEP | HCCA |
| MF | GO:0004521 | endoribonuclease activity | IEP | HCCA |
| MF | GO:0004525 | ribonuclease III activity | IEP | HCCA |
| MF | GO:0004540 | ribonuclease activity | IEP | HCCA |
| MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005515 | protein binding | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| BP | GO:0006996 | organelle organization | IEP | HCCA |
| BP | GO:0007030 | Golgi organization | IEP | HCCA |
| BP | GO:0016567 | protein ubiquitination | IEP | HCCA |
| MF | GO:0016740 | transferase activity | IEP | HCCA |
| MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | HCCA |
| MF | GO:0016891 | endoribonuclease activity, producing 5'-phosphomonoesters | IEP | HCCA |
| MF | GO:0016893 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | IEP | HCCA |
| MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | HCCA |
| MF | GO:0032296 | double-stranded RNA-specific ribonuclease activity | IEP | HCCA |
| BP | GO:0032446 | protein modification by small protein conjugation | IEP | HCCA |
| BP | GO:0036211 | protein modification process | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| BP | GO:0043412 | macromolecule modification | IEP | HCCA |
| MF | GO:0140096 | catalytic activity, acting on a protein | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |