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  5. Mp4g12850.1

Mp4g12850.1


Description : Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana (sp|q8lb54|prp38_arath : 307.0)


Gene families : OG0004863 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004863_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp4g12850.1
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
AT2G40650 No alias PRP38 family protein 0.04 OrthoFinder output from all 47 species
Aev_g05303 No alias splicing factor *(PRP38) & original description: none 0.01 OrthoFinder output from all 47 species
Als_g14204 No alias splicing factor *(PRP38) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g58256 No alias splicing factor *(PRP38) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g05834 No alias splicing factor *(PRP38) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g13422 No alias splicing factor *(PRP38) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0185.g056662 No alias splicing factor *(PRP38) & original description: CDS=131-1414 0.02 OrthoFinder output from all 47 species
Cba_g00905 No alias splicing factor *(PRP38) & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.13G099000.1 Ceric.13G099000 splicing factor *(PRP38) & original description:... 0.03 OrthoFinder output from all 47 species
Cre12.g503400 No alias Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
GSVIVT01031188001 No alias Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_09468 No alias Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os09g01630.1 LOC_Os09g01630 Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Msp_g14119 No alias splicing factor *(PRP38) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g07486 No alias splicing factor *(PRP38) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g26333 No alias splicing factor *(PRP38) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g100060.4.1 Solyc01g100060 Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Zm00001e009450_P001 Zm00001e009450 Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR005037 PRP38 11 172
No external refs found!