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  5. Mp4g06200.1

Mp4g06200.1


Description : KH domain-containing protein At5g56140 OS=Arabidopsis thaliana (sp|q9fkt4|qkil2_arath : 289.0)


Gene families : OG0001245 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001245_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp4g06200.1
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
Adi_g018194 No alias STAR-type post-transcriptionally regulatory factor &... 0.01 OrthoFinder output from all 47 species
Adi_g020660 No alias STAR-type post-transcriptionally regulatory factor &... 0.01 OrthoFinder output from all 47 species
Adi_g036498 No alias STAR-type post-transcriptionally regulatory factor &... 0.02 OrthoFinder output from all 47 species
Adi_g057009 No alias STAR-type post-transcriptionally regulatory factor &... 0.01 OrthoFinder output from all 47 species
Aob_g17232 No alias STAR-type post-transcriptionally regulatory factor &... 0.02 OrthoFinder output from all 47 species
Cba_g12930 No alias STAR-type post-transcriptionally regulatory factor &... 0.02 OrthoFinder output from all 47 species
Dac_g00753 No alias STAR-type post-transcriptionally regulatory factor &... 0.02 OrthoFinder output from all 47 species
MA_25157g0020 No alias KH domain-containing protein At4g26480 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e009383_P001 Zm00001e009383 KH domain-containing protein SPIN1 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Zm00001e033145_P002 Zm00001e033145 KH domain-containing protein SPIN1 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0016272 prefoldin complex IEP HCCA
CC GO:0030014 CCR4-NOT complex IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 150 194
IPR032377 STAR_dimer 32 66
No external refs found!