Aliases : At-SCL30A, SCL30A
Description : SCL28/30/33 RNA splicing factor
Gene families : OG0001193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001193_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT3G13570 | At-SCL30A, SCL30A | SC35-like splicing factor 30A | 0.03 | OrthoFinder output from all 47 species | |
Adi_g014842 | At-SCL30A, SCL30A | RNA splicing factor *(SCL28/30/33) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Cba_g38569 | At-SCL30A, SCL30A | RNA splicing factor *(SCL28/30/33) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ceric.17G037900.1 | At-SCL30A,... | RNA splicing factor *(SCL28/30/33) & original... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.21G035200.1 | At-SCL30A,... | RNA splicing factor *(SCL28/30/33) & original... | 0.03 | OrthoFinder output from all 47 species | |
Dac_g23786 | At-SCL30A, SCL30A | RNA splicing factor *(SCL28/30/33) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Dcu_g08086 | At-SCL30A, SCL30A | RNA splicing factor *(SCL28/30/33) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Dde_g18442 | At-SCL30A, SCL30A | RNA splicing factor *(SCL28/30/33) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ehy_g15811 | At-SCL30A, SCL30A | RNA splicing factor *(SCL28/30/33) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01001344001 | At-SCL30A, SCL30A | No description available | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01016562001 | SCL30, At-SCL30 | RNA processing.RNA splicing.spliceosome-associated... | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os02g15310.1 | SCL30, At-SCL30,... | SCL28/30/33 RNA splicing factor | 0.02 | OrthoFinder output from all 47 species | |
Ore_g03163 | At-SCL30A, SCL30A | RNA splicing factor *(SCL28/30/33) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Pir_g63277 | At-SCL30A, SCL30A | RNA splicing factor *(SCL28/30/33) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ppi_g10815 | At-SCL30A, SCL30A | RNA splicing factor *(SCL28/30/33) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0010.g004666 | At-SCL30A, SCL30A | RNA splicing factor *(SCL28/30/33) & original... | 0.03 | OrthoFinder output from all 47 species | |
Solyc01g005820.4.1 | At-SCL30A,... | SCL28/30/33 RNA splicing factor | 0.02 | OrthoFinder output from all 47 species | |
Spa_g29764 | At-SCL30A, SCL30A | EC_2.7 transferase transferring phosphorus-containing... | 0.03 | OrthoFinder output from all 47 species | |
Tin_g05076 | At-SCL30A, SCL30A | RNA splicing factor *(SCL28/30/33) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Tin_g46163 | At-SCL30A, SCL30A | RNA splicing factor *(SCL28/30/33) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e001755_P002 | At-SCL28, SCL28,... | SCL28/30/33 RNA splicing factor | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e002967_P002 | SCL30, At-SCL30,... | SCL28/30/33 RNA splicing factor | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003678 | DNA helicase activity | IEP | HCCA |
MF | GO:0004386 | helicase activity | IEP | HCCA |
MF | GO:0004519 | endonuclease activity | IEP | HCCA |
CC | GO:0005634 | nucleus | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006302 | double-strand break repair | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
BP | GO:0006397 | mRNA processing | IEP | HCCA |
BP | GO:0006631 | fatty acid metabolic process | IEP | HCCA |
BP | GO:0006633 | fatty acid biosynthetic process | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0008033 | tRNA processing | IEP | HCCA |
MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
MF | GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | IEP | HCCA |
MF | GO:0016788 | hydrolase activity, acting on ester bonds | IEP | HCCA |
MF | GO:0016790 | thiolester hydrolase activity | IEP | HCCA |
MF | GO:0017150 | tRNA dihydrouridine synthase activity | IEP | HCCA |
MF | GO:0030145 | manganese ion binding | IEP | HCCA |
BP | GO:0031123 | RNA 3'-end processing | IEP | HCCA |
BP | GO:0031124 | mRNA 3'-end processing | IEP | HCCA |
BP | GO:0032787 | monocarboxylic acid metabolic process | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
CC | GO:0043226 | organelle | IEP | HCCA |
CC | GO:0043227 | membrane-bounded organelle | IEP | HCCA |
CC | GO:0043229 | intracellular organelle | IEP | HCCA |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | HCCA |
BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
BP | GO:0044238 | primary metabolic process | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
MF | GO:0050660 | flavin adenine dinucleotide binding | IEP | HCCA |
BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
BP | GO:0072330 | monocarboxylic acid biosynthetic process | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
MF | GO:0106413 | dihydrouridine synthase activity | IEP | HCCA |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000504 | RRM_dom | 40 | 111 |
No external refs found! |