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  5. Mp3g15890.1

Mp3g15890.1


Description : no hits & (original description: none)


Gene families : OG0001292 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001292_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp3g15890.1
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
AT5G55040 No alias DNA-binding bromodomain-containing protein 0.03 OrthoFinder output from all 47 species
Adi_g109942 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g08054 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Als_g57133 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Aspi01Gene38130.t1 Aspi01Gene38130 SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Aspi01Gene72686.t1 Aspi01Gene72686 SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Cba_g66228 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Cba_g77448 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Gb_36938 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Lfl_g05033 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Msp_g34665 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g41800 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.06 OrthoFinder output from all 47 species
Ore_g17328 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Pir_g15318 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Pir_g60712 No alias SMARCI component *(BRD) of SWI/SNF chromatin remodeling... 0.05 OrthoFinder output from all 47 species
Solyc07g064700.4.1 Solyc07g064700 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g56272 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR001487 Bromodomain 227 308
No external refs found!