Mp3g10920.1

Description : Katanin p60 ATPase-containing subunit A1 OS=Arabidopsis thaliana (sp|q9sex2|ktna1_arath : 212.0)

Gene families : OG0000425 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000425_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Mp3g10920.1
Cluster	HCCA: Cluster_27

Target	Alias	Description	ECC score	Gene Family Method
Adi_g055524	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g14828	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene38622.t1	Aspi01Gene38622	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g43976	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g01697	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Len_g22112	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
MA_10428622g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Ppi_g30927	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g30928	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Solyc06g072017.1.1	Solyc06g072017	no hits & (original description: none)	0.01	OrthoFinder output from all 47 species
Spa_g26388	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004674	protein serine/threonine kinase activity	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	HCCA
MF	GO:0017150	tRNA dihydrouridine synthase activity	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	HCCA
MF	GO:0106413	dihydrouridine synthase activity	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR041569	AAA_lid_3	694	728
IPR003959	ATPase_AAA_core	541	671

External Links

No external refs found!