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Description : NUP1/NUP136 nucleoporin of nuclear pore complex
Gene families : OG0002028 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002028_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT3G10650 | No alias | BEST Arabidopsis thaliana protein match is:... | 0.06 | OrthoFinder output from all 47 species | |
| Ala_g06113 | No alias | nucleoporin of nuclear pore complex *(NUP1/NUP136) &... | 0.03 | OrthoFinder output from all 47 species | |
| Als_g30303 | No alias | nucleoporin of nuclear pore complex *(NUP1/NUP136) &... | 0.02 | OrthoFinder output from all 47 species | |
| Als_g31899 | No alias | nucleoporin of nuclear pore complex *(NUP1/NUP136) &... | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene66530.t2 | Aspi01Gene66530 | nucleoporin of nuclear pore complex *(NUP1/NUP136) &... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g14237 | No alias | nucleoporin of nuclear pore complex *(NUP1/NUP136) &... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.07G044000.1 | Ceric.07G044000 | not classified & original description: pacid=50627215... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.08G016500.1 | Ceric.08G016500 | not classified & original description: pacid=50638572... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.1Z123400.1 | Ceric.1Z123400 | nucleoporin of nuclear pore complex *(NUP1/NUP136) &... | 0.04 | OrthoFinder output from all 47 species | |
| Dac_g06530 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g05781 | No alias | nucleoporin of nuclear pore complex *(NUP1/NUP136) &... | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g49204 | No alias | nucleoporin of nuclear pore complex *(NUP1/NUP136) &... | 0.06 | OrthoFinder output from all 47 species | |
| Ehy_g04036 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g26942 | No alias | nucleoporin of nuclear pore complex *(NUP1/NUP136) &... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01034601001 | No alias | Protein translocation.nucleus.nucleocytoplasmic... | 0.05 | OrthoFinder output from all 47 species | |
| Gb_18080 | No alias | NUP1/NUP136 nucleoporin of nuclear pore complex | 0.03 | OrthoFinder output from all 47 species | |
| Len_g19191 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g14234 | No alias | nuclear lamina CRWN-interacting protein *(KAKU4) &... | 0.03 | OrthoFinder output from all 47 species | |
| MA_87384g0010 | No alias | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g09860 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Pnu_g11296 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0043.g012850 | No alias | not classified & original description: CDS=3-2681 | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g13887 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g19952 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g19954 | No alias | nuclear lamina CRWN-interacting protein *(KAKU4) &... | 0.05 | OrthoFinder output from all 47 species | |
| Sam_g51943 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Solyc05g055110.4.1 | Solyc05g055110 | NUP1/NUP136 nucleoporin of nuclear pore complex | 0.03 | OrthoFinder output from all 47 species | |
| Solyc11g006390.2.1 | Solyc11g006390 | NUP1/NUP136 nucleoporin of nuclear pore complex | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g09277 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g06136 | No alias | nucleoporin of nuclear pore complex *(NUP1/NUP136) &... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e005928_P001 | Zm00001e005928 | NUP1/NUP136 nucleoporin of nuclear pore complex | 0.07 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | HCCA |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | HCCA |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003924 | GTPase activity | IEP | HCCA |
| MF | GO:0004386 | helicase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| MF | GO:0005525 | GTP binding | IEP | HCCA |
| BP | GO:0006397 | mRNA processing | IEP | HCCA |
| BP | GO:0008380 | RNA splicing | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |