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  5. Mp3g04080.1

Mp3g04080.1 (WTF1, AtWTF1)


Aliases : WTF1, AtWTF1

Description : WTF1 plastidial RNA basal splicing factor


Gene families : OG0001240 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001240_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp3g04080.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00241290 WTF1, AtWTF1,... RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
AT4G01037 WTF1, AtWTF1 Ubiquitin carboxyl-terminal hydrolase family protein 0.09 OrthoFinder output from all 47 species
AT5G62990 emb1692 Ubiquitin carboxyl-terminal hydrolase family protein 0.03 OrthoFinder output from all 47 species
Aop_g29986 WTF1, AtWTF1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene21348.t1 WTF1, AtWTF1,... plastidial RNA basal splicing factor *(WTF1) & original... 0.02 OrthoFinder output from all 47 species
Cba_g22101 WTF1, AtWTF1 plastidial RNA basal splicing factor *(WTF1) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01027077001 WTF1, AtWTF1 RNA processing.organelle machineries.RNA... 0.05 OrthoFinder output from all 47 species
LOC_Os04g24710.1 emb1692, LOC_Os04g24710 Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os05g49610.1 WTF1, AtWTF1,... WTF1 plastidial RNA basal splicing factor 0.02 OrthoFinder output from all 47 species
MA_423098g0010 WTF1, AtWTF1 WTF1 plastidial RNA basal splicing factor 0.02 OrthoFinder output from all 47 species
Msp_g11347 WTF1, AtWTF1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g08880 WTF1, AtWTF1 plastidial RNA basal splicing factor *(WTF1) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g10310 WTF1, AtWTF1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0075.g017364 WTF1, AtWTF1 not classified & original description: CDS=1-1380 0.02 OrthoFinder output from all 47 species
Sam_g15863 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e026570_P001 WTF1, AtWTF1,... WTF1 plastidial RNA basal splicing factor 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0070569 uridylyltransferase activity IEP HCCA
InterPro domains Description Start Stop
IPR021099 PORR_domain 42 385
No external refs found!