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  5. Mp3g00700.1

Mp3g00700.1 (SMC5)


Aliases : SMC5

Description : component SMC5 of homologous recombination repair Smc5-Smc6 complex


Gene families : OG0004405 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004405_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp3g00700.1
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00247730 SMC5,... DNA damage response.DNA repair mechanisms.homologous... 0.02 OrthoFinder output from all 47 species
Adi_g012781 SMC5 component *(SMC5) of homologous recombination repair... 0.01 OrthoFinder output from all 47 species
Cba_g11568 SMC5 component *(SMC5) of homologous recombination repair... 0.02 OrthoFinder output from all 47 species
Cre10.g440200 SMC5 DNA damage response.DNA repair mechanisms.homologous... 0.02 OrthoFinder output from all 47 species
GSVIVT01032195001 SMC5 DNA damage response.DNA repair mechanisms.homologous... 0.03 OrthoFinder output from all 47 species
LOC_Os05g51790.1 SMC5, LOC_Os05g51790 component SMC5 of homologous recombination repair... 0.03 OrthoFinder output from all 47 species
Lfl_g02324 SMC5 component *(SMC5) of homologous recombination repair... 0.02 OrthoFinder output from all 47 species
Ppi_g17839 SMC5 component *(SMC5) of homologous recombination repair... 0.02 OrthoFinder output from all 47 species
Sam_g40490 No alias component *(SMC5) of homologous recombination repair... 0.01 OrthoFinder output from all 47 species
Zm00001e013059_P001 SMC5, Zm00001e013059 component SMC5 of homologous recombination repair... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000723 telomere maintenance IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR003395 RecF/RecN/SMC_N 28 994
No external refs found!