Mp2g26680.1 (PKL, GYM, CHR6, SSL2, CHD3)


Aliases : PKL, GYM, CHR6, SSL2, CHD3

Description : CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana (sp|q9s775|pkl_arath : 424.0)


Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp2g26680.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00086p00165640 PKL, GYM, CHR6,... Chromatin organisation.chromatin remodeling... 0.03 OrthoFinder output from all 47 species
AMTR_s00090p00148990 SYD, CHR3,... Chromatin organisation.chromatin remodeling... 0.03 OrthoFinder output from all 47 species
AT2G13370 CHR5 chromatin remodeling 5 0.06 OrthoFinder output from all 47 species
AT2G25170 PKL, GYM, CHR6,... chromatin remodeling factor CHD3 (PICKLE) 0.04 OrthoFinder output from all 47 species
AT2G28290 SYD, CHR3 P-loop containing nucleoside triphosphate hydrolases... 0.07 OrthoFinder output from all 47 species
AT3G06010 ATCHR12 Homeotic gene regulator 0.03 OrthoFinder output from all 47 species
AT5G44800 PKR1, CHR4 chromatin remodeling 4 0.04 OrthoFinder output from all 47 species
Adi_g011533 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g011986 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Adi_g012014 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Adi_g078005 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g04898 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g09087 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g13876 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Ala_g02726 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Ala_g11306 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g11507 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Ala_g12634 PKL, GYM, CHR6,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g17670 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.05 OrthoFinder output from all 47 species
Ala_g27421 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36219 ATCHR12 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g01984 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.01 OrthoFinder output from all 47 species
Als_g16533 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g56902 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Als_g59182 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
Aob_g18236 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g18378 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
Aob_g29249 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Aob_g29989 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
Aop_g05323 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g13607 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
Aop_g13768 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.01 OrthoFinder output from all 47 species
Aspi01Gene16597.t1 PKL, GYM, CHR6,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene25758.t1 SYD, CHR3,... SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene52538.t1 PKL, GYM, CHR6,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0013.g013433 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Azfi_s0024.g020347 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description:... 0.03 OrthoFinder output from all 47 species
Azfi_s0129.g048917 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Azfi_s0354.g066689 CHR11 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.02 OrthoFinder output from all 47 species
Ceric.03G025400.1 PKL, GYM, CHR6,... not classified & original description: pacid=50572032... 0.04 OrthoFinder output from all 47 species
Ceric.06G004000.1 Ceric.06G004000 chromatin remodeling factor *(ALC1) & original... 0.02 OrthoFinder output from all 47 species
Ceric.06G006600.1 ATCHR12, Ceric.06G006600 SMARCA component *(SYD/BRM/MINU) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.10G020300.1 CHR5, Ceric.10G020300 component *(CHR5) of SAGA transcription co-activator... 0.06 OrthoFinder output from all 47 species
Ceric.1Z205000.1 PKR1, CHR4,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.05 OrthoFinder output from all 47 species
Ceric.36G015700.1 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.06 OrthoFinder output from all 47 species
Ceric.37G008600.1 SYD, CHR3,... SMARCA component *(SYD/BRM/MINU) & original description:... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000217.24 SYD, CHR3 Chromatin structure-remodeling complex protein SYD... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000217.25 SYD, CHR3 Chromatin structure-remodeling complex protein SYD... 0.02 OrthoFinder output from all 47 species
Cre03.g179300 CHR5 RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
Cre08.g377200 PKL, GYM, CHR6,... CHD3-type chromatin-remodeling factor PICKLE... 0.02 OrthoFinder output from all 47 species
Cre09.g390000 CHR17 RNA biosynthesis.transcriptional activation.PHD finger... 0.02 OrthoFinder output from all 47 species
Cre12.g508150 CHR11 Chromatin organisation.chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Cre16.g647602 CHR01, CHR1,... ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g09430 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g10723 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Dac_g15532 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g22721 PKL, GYM, CHR6,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g02069 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.04 OrthoFinder output from all 47 species
Dcu_g03207 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.06 OrthoFinder output from all 47 species
Dcu_g03216 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
Dcu_g19159 CHR11 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.06 OrthoFinder output from all 47 species
Dcu_g20924 CHR11 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g34346 No alias chromatin remodeling factor *(ALC1) & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g38948 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g42511 PKL, GYM, CHR6,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g09078 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g15984 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g18387 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
GSVIVT01012117001 PKR1, CHR4 RNA biosynthesis.transcriptional activation.PHD finger... 0.03 OrthoFinder output from all 47 species
GSVIVT01017820001 SYD, CHR3 Chromatin organisation.chromatin remodeling... 0.05 OrthoFinder output from all 47 species
GSVIVT01017921001 ATCHR12 Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder output from all 47 species
GSVIVT01018218001 No alias Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder output from all 47 species
GSVIVT01035901001 PKL, GYM, CHR6,... Chromatin organisation.chromatin remodeling... 0.04 OrthoFinder output from all 47 species
GSVIVT01037235001 CHR5 RNA biosynthesis.RNA polymerase II-dependent... 0.04 OrthoFinder output from all 47 species
Gb_35181 CHR5 chromatin remodeling factor (Chd1). component CHR5 of... 0.02 OrthoFinder output from all 47 species
LOC_Os05g05230.1 ATCHR12, LOC_Os05g05230 chromatin remodeling factor (Snf2) 0.02 OrthoFinder output from all 47 species
LOC_Os06g08480.1 PKL, GYM, CHR6,... chromatin remodeling factor (Chd3/Mi-2) 0.04 OrthoFinder output from all 47 species
LOC_Os07g31450.1 PKR1, CHR4,... chromatin remodeling factor (Chd3/Mi-2) 0.02 OrthoFinder output from all 47 species
LOC_Os07g46590.1 CHR5, LOC_Os07g46590 chromatin remodeling factor (Chd1). component CHR5 of... 0.02 OrthoFinder output from all 47 species
Len_g01407 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.05 OrthoFinder output from all 47 species
Len_g08675 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Len_g11421 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g35371 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g57697 PKL, GYM, CHR6,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g02374 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.01 OrthoFinder output from all 47 species
Lfl_g04300 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g06769 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Lfl_g16058 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
Lfl_g28014 PKL, GYM, CHR6,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g30624 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.04 OrthoFinder output from all 47 species
Lfl_g38627 No alias chromatin remodeling factor *(ALC1) & original description: none 0.02 OrthoFinder output from all 47 species
MA_10427196g0010 PKL, GYM, CHR6,... CHD3-type chromatin-remodeling factor PICKLE... 0.03 OrthoFinder output from all 47 species
MA_10429361g0010 CHR5 chromatin remodeling factor (Chd1). component CHR5 of... 0.02 OrthoFinder output from all 47 species
MA_10430012g0010 PKL, GYM, CHR6,... CHD3-type chromatin-remodeling factor PICKLE... 0.02 OrthoFinder output from all 47 species
MA_8926002g0010 SYD, CHR3 Chromatin structure-remodeling complex protein SYD... 0.02 OrthoFinder output from all 47 species
Msp_g13206 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
Msp_g14766 PKL, GYM, CHR6,... not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g15707 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
Msp_g16227 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.06 OrthoFinder output from all 47 species
Nbi_g02510 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Nbi_g39328 PKL, GYM, CHR6,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g10377 CHR17 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g12701 CHR11 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g12901 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g16130 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g18803 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
Ore_g26259 SYD, CHR3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g29874 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Pir_g11423 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Pir_g15839 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g39866 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g23970 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
Ppi_g13843 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g32094 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005448 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description:... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007981 PKL, GYM, CHR6,... WRKY-type transcription factor & original description: CDS=1-4410 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0023.g008777 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Sam_g16204 No alias SMARCA component *(SYD/BRM/MINU) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g17473 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29220 No alias component *(CHR5) of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
Sam_g36172 No alias SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36819 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.01 OrthoFinder output from all 47 species
Sam_g49524 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g50499 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g50989 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo102849 ATCHR12 Chromatin organisation.chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Smo155996 PKL, GYM, CHR6,... Chromatin organisation.chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Smo177985 PKL, GYM, CHR6,... Chromatin organisation.chromatin remodeling... 0.05 OrthoFinder output from all 47 species
Smo440203 CHR11 Chromatin organisation.chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Smo440815 CHR5 RNA biosynthesis.RNA polymerase II-dependent... 0.04 OrthoFinder output from all 47 species
Solyc02g062780.4.1 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.03 OrthoFinder output from all 47 species
Solyc02g068560.3.1 PKR1, CHR4,... chromatin remodeling factor (Chd3/Mi-2) 0.03 OrthoFinder output from all 47 species
Solyc06g054560.3.1 CHR11, Solyc06g054560 chromatin remodeling factor (Iswi) 0.05 OrthoFinder output from all 47 species
Solyc06g065730.3.1 PKL, GYM, CHR6,... chromatin remodeling factor (Chd3/Mi-2) 0.05 OrthoFinder output from all 47 species
Solyc11g062010.3.1 SYD, CHR3, Solyc11g062010 chromatin remodeling factor (Snf2) 0.06 OrthoFinder output from all 47 species
Spa_g06215 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g12616 PKL, GYM, CHR6,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g17788 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g21583 CHR17 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.02 OrthoFinder output from all 47 species
Spa_g21765 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.05 OrthoFinder output from all 47 species
Spa_g30961 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Tin_g08468 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g10985 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e026331_P001 CHR17, Zm00001e026331 chromatin remodeling factor (Iswi) 0.03 OrthoFinder output from all 47 species
Zm00001e030969_P003 SYD, CHR3, Zm00001e030969 chromatin remodeling factor (Snf2) 0.08 OrthoFinder output from all 47 species
Zm00001e040406_P002 ATCHR12, Zm00001e040406 chromatin remodeling factor (Snf2) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0004677 DNA-dependent protein kinase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 2095 2206
IPR000330 SNF2_N 1785 2069
IPR023780 Chromo_domain 1694 1737
No external refs found!