Mp2g16090.1 (HY3, OOP1, PHYB)

Aliases : HY3, OOP1, PHYB

Description : phytochrome photoreceptor (PHY). temperature sensor protein (PHY-B)

Gene families : OG0000699 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000699_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Mp2g16090.1

Target	Alias	Description	ECC score	Gene Family Method
AT4G16250	PHYD	phytochrome D	0.02	OrthoFinder output from all 47 species
Als_g06869	FHY2, HY8, PHYA, FRE1	phytochrome photoreceptor *(PHY) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g11269	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene09133.t1	HY3, OOP1, PHYB,...	temperature sensor protein *(PHY-B) & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g03002	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g26723	HY3, OOP1, PHYB	phytochrome photoreceptor *(PHY) & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g07141	HY3, OOP1, PHYB	phytochrome photoreceptor *(PHY) & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g06926	HY3, OOP1, PHYB	temperature sensor protein *(PHY-B) & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012090	HY3, OOP1, PHYB	phytochrome photoreceptor *(PHY) & original description:...	0.02	OrthoFinder output from all 47 species
Solyc01g059870.4.1	HY3, OOP1, PHYB,...	phytochrome photoreceptor (PHY). temperature sensor...	0.03	OrthoFinder output from all 47 species
Spa_g14459	FHY2, HY8, PHYA, FRE1	phytochrome photoreceptor *(PHY) & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004672	protein kinase activity	None	Extended
MF	GO:0004673	protein histidine kinase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0007165	signal transduction	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009581	detection of external stimulus	None	Extended
BP	GO:0009582	detection of abiotic stimulus	None	Extended
BP	GO:0009583	detection of light stimulus	None	Extended
BP	GO:0009584	detection of visible light	IEA	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
MF	GO:0016301	kinase activity	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	None	Extended
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	None	Extended
BP	GO:0018298	obsolete protein-chromophore linkage	IEA	Interproscan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051606	detection of stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:0140299	small molecule sensor activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003661	HisK_dim/P	892	955
IPR013654	PAS_2	68	184
IPR013767	PAS_fold	747	869
IPR013767	PAS_fold	616	731
IPR013515	Phytochrome_cen-reg	411	584
IPR003018	GAF	217	398

External Links

No external refs found!

Mp2g16090.1 (HY3, OOP1, PHYB)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation