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  5. Mp2g02990.1

Mp2g02990.1


Description : C3H zinc finger transcription factor. regulatory component ZC11A of TREX/THO mRNP trafficking complex


Gene families : OG0001116 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001116_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp2g02990.1

Target Alias Description ECC score Gene Family Method Actions
AT2G02160 No alias CCCH-type zinc finger family protein 0.04 OrthoFinder output from all 47 species
Adi_g059321 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.02 OrthoFinder output from all 47 species
Adi_g059322 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g075164 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.02 OrthoFinder output from all 47 species
Adi_g101926 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.01 OrthoFinder output from all 47 species
Ala_g11644 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.02 OrthoFinder output from all 47 species
Als_g33970 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.02 OrthoFinder output from all 47 species
Aob_g03607 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.02 OrthoFinder output from all 47 species
Aop_g08827 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.04 OrthoFinder output from all 47 species
Aop_g13084 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.12G089800.1 Ceric.12G089800 regulatory protein *(ZC11A) of mRNA export & original... 0.03 OrthoFinder output from all 47 species
Ceric.21G028800.1 Ceric.21G028800 regulatory protein *(ZC11A) of mRNA export & original... 0.03 OrthoFinder output from all 47 species
Ceric.23G004600.1 Ceric.23G004600 regulatory protein *(ZC11A) of mRNA export & original... 0.02 OrthoFinder output from all 47 species
Dac_g05770 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.05 OrthoFinder output from all 47 species
Dac_g29062 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.02 OrthoFinder output from all 47 species
Dac_g31773 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.02 OrthoFinder output from all 47 species
Dcu_g24147 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.05 OrthoFinder output from all 47 species
Dde_g07646 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.02 OrthoFinder output from all 47 species
Dde_g24424 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.02 OrthoFinder output from all 47 species
Ehy_g04002 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.02 OrthoFinder output from all 47 species
Ehy_g13498 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.04 OrthoFinder output from all 47 species
Gb_02253 No alias C3H zinc finger transcription factor. regulatory... 0.03 OrthoFinder output from all 47 species
Gb_10712 No alias C3H zinc finger transcription factor. regulatory... 0.05 OrthoFinder output from all 47 species
LOC_Os04g57600.1 LOC_Os04g57600 C3H zinc finger transcription factor. regulatory... 0.02 OrthoFinder output from all 47 species
Lfl_g04207 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.06 OrthoFinder output from all 47 species
Lfl_g04961 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.04 OrthoFinder output from all 47 species
MA_17019g0010 No alias C3H zinc finger transcription factor 0.06 OrthoFinder output from all 47 species
Msp_g13228 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.03 OrthoFinder output from all 47 species
Nbi_g17064 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.02 OrthoFinder output from all 47 species
Ore_g17489 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.02 OrthoFinder output from all 47 species
Ore_g37675 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.04 OrthoFinder output from all 47 species
Pir_g09783 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.04 OrthoFinder output from all 47 species
Pir_g10434 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.02 OrthoFinder output from all 47 species
Pir_g30352 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.04 OrthoFinder output from all 47 species
Pnu_g01161 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007865 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008491 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0220.g026153 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.05 OrthoFinder output from all 47 species
Sam_g17521 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.02 OrthoFinder output from all 47 species
Sam_g27203 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.03 OrthoFinder output from all 47 species
Smo441325 No alias RNA processing.messenger ribonucleoprotein particle... 0.02 OrthoFinder output from all 47 species
Solyc01g008170.3.1 Solyc01g008170 C3H zinc finger transcription factor. regulatory... 0.04 OrthoFinder output from all 47 species
Solyc04g008550.4.1 Solyc04g008550 C3H zinc finger transcription factor. regulatory... 0.07 OrthoFinder output from all 47 species
Spa_g30365 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.03 OrthoFinder output from all 47 species
Spa_g48975 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.02 OrthoFinder output from all 47 species
Spa_g49982 No alias regulatory protein *(ZC11A) of mRNA export & original... 0.02 OrthoFinder output from all 47 species
Zm00001e023520_P001 Zm00001e023520 C3H zinc finger transcription factor. regulatory... 0.03 OrthoFinder output from all 47 species
Zm00001e041908_P001 Zm00001e041908 C3H zinc finger transcription factor. regulatory... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000776 kinetochore IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0034508 centromere complex assembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0099080 supramolecular complex IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR041686 Znf-CCCH_3 7 61
IPR000571 Znf_CCCH 84 106
No external refs found!