Description : dual-specificity tRNA/rRNA pseudouridine synthase (RluA)
Gene families : OG0004230 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004230_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Mp1g26320.1 | |
Cluster | HCCA: Cluster_12 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cpa|evm.model.tig00001471.10 | No alias | No description available | 0.01 | OrthoFinder output from all 47 species | |
Pnu_g10416 | No alias | RNA pseudouridine synthase *(PUS5) & original description: none | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001522 | pseudouridine synthesis | IEA | Interproscan |
MF | GO:0003723 | RNA binding | IEA | Interproscan |
BP | GO:0009451 | RNA modification | IEA | Interproscan |
MF | GO:0009982 | pseudouridine synthase activity | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEP | HCCA |
MF | GO:0003690 | double-stranded DNA binding | IEP | HCCA |
MF | GO:0004518 | nuclease activity | IEP | HCCA |
BP | GO:0006352 | DNA-templated transcription initiation | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
MF | GO:0015291 | secondary active transmembrane transporter activity | IEP | HCCA |
MF | GO:0015297 | antiporter activity | IEP | HCCA |
BP | GO:0016073 | snRNA metabolic process | IEP | HCCA |
BP | GO:0016180 | snRNA processing | IEP | HCCA |
MF | GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups | IEP | HCCA |
MF | GO:0016787 | hydrolase activity | IEP | HCCA |
MF | GO:0016788 | hydrolase activity, acting on ester bonds | IEP | HCCA |
BP | GO:0031123 | RNA 3'-end processing | IEP | HCCA |
BP | GO:0034470 | ncRNA processing | IEP | HCCA |
BP | GO:0034472 | snRNA 3'-end processing | IEP | HCCA |
BP | GO:0034477 | U6 snRNA 3'-end processing | IEP | HCCA |
BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
MF | GO:0042910 | xenobiotic transmembrane transporter activity | IEP | HCCA |
MF | GO:0050660 | flavin adenine dinucleotide binding | IEP | HCCA |
MF | GO:0071949 | FAD binding | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR006145 | PsdUridine_synth_RsuA/RluA | 106 | 295 |
No external refs found! |