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  5. Mp1g24610.1

Mp1g24610.1


Description : PH, RCC1 and FYVE domains-containing protein 1 OS=Arabidopsis thaliana (sp|q947d2|praf1_arath : 952.0)


Gene families : OG0000592 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000592_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g24610.1
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
AT5G12350 No alias Regulator of chromosome condensation (RCC1) family with... 0.05 OrthoFinder output from all 47 species
AT5G19420 No alias Regulator of chromosome condensation (RCC1) family with... 0.02 OrthoFinder output from all 47 species
AT5G42140 No alias Regulator of chromosome condensation (RCC1) family with... 0.03 OrthoFinder output from all 47 species
Adi_g014208 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g117138 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g20707 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g04725 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g09949 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g32427 No alias regulatory protein *(RLD) of gravity sensing & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene71481.t1 Aspi01Gene71481 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g02089 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.25G075400.1 Ceric.25G075400 not classified & original description: pacid=50594355... 0.03 OrthoFinder output from all 47 species
Ceric.35G058700.1 Ceric.35G058700 not classified & original description: pacid=50582057... 0.03 OrthoFinder output from all 47 species
Cre16.g691050 PRAF1 PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species
Dac_g09907 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g25466 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g30318 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01001675001 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.04 OrthoFinder output from all 47 species
Gb_13554 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.05 OrthoFinder output from all 47 species
MA_54149g0010 PRAF1 PH, RCC1 and FYVE domains-containing protein 1... 0.04 OrthoFinder output from all 47 species
Nbi_g12010 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g10951 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g19472 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g27077 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g13544 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g14558 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0016.g006893 No alias not classified & original description: CDS=1775-4951 0.02 OrthoFinder output from all 47 species
Solyc04g071040.4.1 PRAF1, Solyc04g071040 PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species
Solyc11g065120.3.1 Solyc11g065120 PH, RCC1 and FYVE domains-containing protein 1... 0.05 OrthoFinder output from all 47 species
Zm00001e028276_P001 Zm00001e028276 PH, RCC1 and FYVE domains-containing protein 1... 0.06 OrthoFinder output from all 47 species
Zm00001e028312_P001 Zm00001e028312 PH, RCC1 and FYVE domains-containing protein 1... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR013591 Brevis_radix_dom 1089 1144
IPR000408 Reg_chr_condens 337 385
IPR000408 Reg_chr_condens 507 556
IPR000408 Reg_chr_condens 389 439
IPR000408 Reg_chr_condens 613 660
IPR000408 Reg_chr_condens 560 608
IPR000408 Reg_chr_condens 444 492
IPR027988 BRX_N 930 960
IPR000306 Znf_FYVE 664 730
No external refs found!