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  5. Mp1g20960.1

Mp1g20960.1


Description : RAF1 assembly factor involved in RuBisCo assembly


Gene families : OG0006523 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006523_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g20960.1
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
AT3G04550 No alias unknown protein; INVOLVED IN: biological_process... 0.03 OrthoFinder output from all 47 species
AT5G28500 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.02 OrthoFinder output from all 47 species
Aev_g05322 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.02 OrthoFinder output from all 47 species
Azfi_s0004.g008439 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.03 OrthoFinder output from all 47 species
Ceric.03G026300.1 Ceric.03G026300 assembly factor involved in RuBisCo assembly *(RAF1) &... 0.03 OrthoFinder output from all 47 species
Dcu_g12984 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.04 OrthoFinder output from all 47 species
Dde_g00790 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.03 OrthoFinder output from all 47 species
Ehy_g03671 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.02 OrthoFinder output from all 47 species
Ehy_g23264 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.02 OrthoFinder output from all 47 species
LOC_Os10g30870.1 LOC_Os10g30870 RAF1 assembly factor involved in RuBisCo assembly 0.02 OrthoFinder output from all 47 species
Len_g10651 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.02 OrthoFinder output from all 47 species
Lfl_g39152 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.03 OrthoFinder output from all 47 species
MA_184421g0020 No alias RAF1 assembly factor involved in RuBisCo assembly 0.05 OrthoFinder output from all 47 species
Ore_g05484 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.02 OrthoFinder output from all 47 species
Ore_g05485 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.02 OrthoFinder output from all 47 species
Pnu_g06513 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.02 OrthoFinder output from all 47 species
Ppi_g52644 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.02 OrthoFinder output from all 47 species
Solyc11g006060.2.1 Solyc11g006060 RAF1 assembly factor involved in RuBisCo assembly 0.03 OrthoFinder output from all 47 species
Spa_g04323 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR040781 Raf1_HTH 91 150
IPR040858 Raf1_C 286 426
IPR041358 Raf1_N 162 268
No external refs found!