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  5. Mp1g19000.1

Mp1g19000.1


Description : component SRP54 of SRP (signal recognition particle) complex


Gene families : OG0003514 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003514_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g19000.1
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00268250 evm_27.TU.AmTr_v1... Protein translocation.endoplasmic... 0.02 OrthoFinder output from all 47 species
Adi_g023847 No alias component *(SRP54) of SRP (signal recognition particle)... 0.04 OrthoFinder output from all 47 species
Ala_g01944 No alias component *(SRP54) of SRP (signal recognition particle)... 0.02 OrthoFinder output from all 47 species
Azfi_s0304.g063828 No alias component *(SRP54) of SRP (signal recognition particle)... 0.02 OrthoFinder output from all 47 species
Ceric.01G080500.1 Ceric.01G080500 component *(SRP54) of SRP (signal recognition particle)... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021254.24 No alias Protein translocation.endoplasmic... 0.02 OrthoFinder output from all 47 species
Dac_g14161 No alias component *(SRP54) of SRP (signal recognition particle)... 0.02 OrthoFinder output from all 47 species
Dcu_g01603 No alias component *(SRP54) of SRP (signal recognition particle)... 0.02 OrthoFinder output from all 47 species
Dde_g05307 No alias component *(SRP54) of SRP (signal recognition particle)... 0.01 OrthoFinder output from all 47 species
Gb_39090 No alias component SRP54 of SRP (signal recognition particle) complex 0.02 OrthoFinder output from all 47 species
Lfl_g04723 No alias component *(SRP54) of SRP (signal recognition particle)... 0.04 OrthoFinder output from all 47 species
MA_10429875g0010 No alias component SRP54 of SRP (signal recognition particle) complex 0.02 OrthoFinder output from all 47 species
Ppi_g03018 No alias component *(SRP54) of SRP (signal recognition particle)... 0.02 OrthoFinder output from all 47 species
Smo158663 No alias Protein translocation.endoplasmic... 0.01 OrthoFinder output from all 47 species
Solyc03g116810.4.1 Solyc03g116810 component SRP54 of SRP (signal recognition particle) complex 0.03 OrthoFinder output from all 47 species
Tin_g06573 No alias component *(SRP54) of SRP (signal recognition particle)... 0.02 OrthoFinder output from all 47 species
Zm00001e028974_P003 Zm00001e028974 component SRP54 of SRP (signal recognition particle) complex 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEA Interproscan
MF GO:0008312 7S RNA binding IEA Interproscan
CC GO:0048500 signal recognition particle IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
CC GO:0017119 Golgi transport complex IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
InterPro domains Description Start Stop
IPR000897 SRP54_GTPase_dom 101 296
IPR004125 Signal_recog_particle_SRP54_M 327 428
IPR013822 Signal_recog_particl_SRP54_hlx 6 83
No external refs found!