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  5. Mp1g17770.1

Mp1g17770.1


Description : deadenylase component CCR4 of CCR4-NOT complex


Gene families : OG0002208 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002208_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g17770.1

Target Alias Description ECC score Gene Family Method Actions
AT3G58580 No alias DNAse I-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g059767 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Aspi01Gene57021.t1 Aspi01Gene57021 deadenylase component *(CCR4) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Azfi_s0357.g066801 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Ceric.03G018800.1 Ceric.03G018800 deadenylase component *(CCR4) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Ceric.1Z049500.1 Ceric.1Z049500 deadenylase component *(CCR4) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Dde_g00902 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Ehy_g09585 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01033442001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.04 OrthoFinder output from all 47 species
LOC_Os03g07080.1 LOC_Os03g07080 deadenylase component CCR4 of CCR4-NOT complex 0.05 OrthoFinder output from all 47 species
LOC_Os10g27230.3 LOC_Os10g27230 deadenylase component CCR4 of CCR4-NOT complex 0.04 OrthoFinder output from all 47 species
Ppi_g03915 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Smo270348 No alias RNA processing.RNA decay.deadenylation-dependent... 0.02 OrthoFinder output from all 47 species
Spa_g18132 No alias deadenylase component *(CCR4) of mRNA deadenylation... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006664 glycolipid metabolic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
MF GO:0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity IEP HCCA
BP GO:0009245 lipid A biosynthetic process IEP HCCA
BP GO:0009247 glycolipid biosynthetic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP HCCA
MF GO:0019213 deacetylase activity IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0046467 membrane lipid biosynthetic process IEP HCCA
BP GO:0046493 lipid A metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901269 lipooligosaccharide metabolic process IEP HCCA
BP GO:1901271 lipooligosaccharide biosynthetic process IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR031615 Zfn-C6H2 71 110
IPR005135 Endo/exonuclease/phosphatase 266 596
No external refs found!