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  5. Mp1g16880.1

Mp1g16880.1


Description : component alpha of TATA box-binding protein NC2 regulator complex


Gene families : OG0002663 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002663_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g16880.1
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
Aob_g05774 NF-YC11 component alpha of TATA box-binding protein NC2... 0.02 OrthoFinder output from all 47 species
Dac_g00620 NF-YC11 component alpha of TATA box-binding protein NC2... 0.04 OrthoFinder output from all 47 species
Ehy_g14535 No alias component alpha of TATA box-binding protein NC2... 0.02 OrthoFinder output from all 47 species
GSVIVT01037394001 NF-YC11 RNA biosynthesis.RNA polymerase II-dependent... 0.05 OrthoFinder output from all 47 species
LOC_Os05g41450.1 NF-YC11, LOC_Os05g41450 component alpha of TATA box-binding protein NC2 regulator complex 0.03 OrthoFinder output from all 47 species
Len_g07274 No alias component alpha of TATA box-binding protein NC2... 0.03 OrthoFinder output from all 47 species
Msp_g01450 No alias component alpha of TATA box-binding protein NC2... 0.02 OrthoFinder output from all 47 species
Pnu_g13575 No alias component alpha of TATA box-binding protein NC2... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0023.g008789 No alias component alpha of TATA box-binding protein NC2... 0.02 OrthoFinder output from all 47 species
Sam_g23841 No alias component alpha of TATA box-binding protein NC2... 0.02 OrthoFinder output from all 47 species
Sam_g39748 No alias component alpha of TATA box-binding protein NC2... 0.02 OrthoFinder output from all 47 species
Sam_g48854 No alias component alpha of TATA box-binding protein NC2... 0.02 OrthoFinder output from all 47 species
Solyc01g096710.4.1 NF-YC11, Solyc01g096710 component alpha of TATA box-binding protein NC2 regulator complex 0.03 OrthoFinder output from all 47 species
Solyc11g072150.3.1 Solyc11g072150 component alpha of TATA box-binding protein NC2 regulator complex 0.04 OrthoFinder output from all 47 species
Spa_g24051 No alias component alpha of TATA box-binding protein NC2... 0.02 OrthoFinder output from all 47 species
Zm00001e011188_P001 NF-YC11, Zm00001e011188 component alpha of TATA box-binding protein NC2 regulator complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016790 thiolester hydrolase activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0043486 obsolete histone exchange IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003958 CBFA_NFYB_domain 8 71
No external refs found!