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  5. Mp1g16460.1

Mp1g16460.1


Description : NOB1 pre-rRNA processing endonuclease involved in ITS1 rRNA removal. endonuclease (NOB1)


Gene families : OG0006353 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006353_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g16460.1
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00110p00064100 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 OrthoFinder output from all 47 species
AT5G41190 No alias CONTAINS InterPro DOMAIN/s: Nin one binding (NOB1)... 0.11 OrthoFinder output from all 47 species
Als_g00927 No alias pre-rRNA processing endonuclease involved in ITS1 rRNA... 0.04 OrthoFinder output from all 47 species
Ceric.01G032400.1 Ceric.01G032400 pre-rRNA processing endonuclease involved in ITS1 rRNA... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020964.11 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Cre01.g031750 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.17 OrthoFinder output from all 47 species
Dac_g28114 No alias pre-rRNA processing endonuclease involved in ITS1 rRNA... 0.02 OrthoFinder output from all 47 species
GSVIVT01019776001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 OrthoFinder output from all 47 species
Gb_33378 No alias NOB1 pre-rRNA processing endonuclease involved in ITS1... 0.05 OrthoFinder output from all 47 species
LOC_Os02g02360.1 LOC_Os02g02360 NOB1 pre-rRNA processing endonuclease involved in ITS1... 0.07 OrthoFinder output from all 47 species
Len_g10290 No alias pre-rRNA processing endonuclease involved in ITS1 rRNA... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0180.g024790 No alias pre-rRNA processing endonuclease involved in ITS1 rRNA... 0.03 OrthoFinder output from all 47 species
Sam_g19265 No alias pre-rRNA processing endonuclease involved in ITS1 rRNA... 0.02 OrthoFinder output from all 47 species
Zm00001e025376_P003 Zm00001e025376 NOB1 pre-rRNA processing endonuclease involved in ITS1... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003937 IMP cyclohydrolase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019238 cyclohydrolase activity IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031167 rRNA methylation IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036265 RNA (guanine-N7)-methylation IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0070475 rRNA base methylation IEP HCCA
BP GO:0070476 rRNA (guanine-N7)-methylation IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR033411 Ribonuclease_PIN 3 30
IPR014881 NOB1_Zn-bd 385 455
No external refs found!