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  5. Mp1g15620.1

Mp1g15620.1 (SDN1)


Aliases : SDN1

Description : miRNA nuclease (SDN1)


Gene families : OG0005194 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005194_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g15620.1
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
Adi_g056438 SDN3 methylated miRNA exoribonuclease *(SDN) & original... 0.02 OrthoFinder output from all 47 species
Als_g16027 SDN3 methylated miRNA exoribonuclease *(SDN) & original... 0.01 OrthoFinder output from all 47 species
Aop_g27825 SDN1 methylated miRNA exoribonuclease *(SDN) & original... 0.01 OrthoFinder output from all 47 species
Dcu_g02880 SDN3 methylated miRNA exoribonuclease *(SDN) & original... 0.02 OrthoFinder output from all 47 species
LOC_Os04g55700.1 SDN3, LOC_Os04g55700 miRNA nuclease (SDN1) 0.02 OrthoFinder output from all 47 species
Ore_g41676 SDN2 methylated miRNA exoribonuclease *(SDN) & original... 0.02 OrthoFinder output from all 47 species
Sam_g10524 No alias methylated miRNA exoribonuclease *(SDN) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0032259 methylation IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
CC GO:0090730 Las1 complex IEP HCCA
CC GO:1902555 endoribonuclease complex IEP HCCA
CC GO:1902911 protein kinase complex IEP HCCA
CC GO:1905348 endonuclease complex IEP HCCA
CC GO:1905354 exoribonuclease complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR013520 Exonuclease_RNaseT/DNA_pol3 159 307
No external refs found!