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  5. Mp1g12710.1

Mp1g12710.1 (RER1)


Aliases : RER1

Description : Protein RETICULATA-RELATED 1, chloroplastic OS=Arabidopsis thaliana (sp|q9fgp9|rer1_arath : 346.0)


Gene families : OG0003719 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003719_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g12710.1
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00265130 LCD1,... Protein RETICULATA, chloroplastic OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT2G37860 LCD1 Protein of unknown function (DUF3411) 0.02 OrthoFinder output from all 47 species
Ala_g01662 RER1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.09G004500.1 RER1, Ceric.09G004500 not classified & original description: pacid=50587095... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000269.110 LCD1 Protein RETICULATA, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Dcu_g06158 RER1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os04g44290.1 RER1, LOC_Os04g44290 Protein RETICULATA-RELATED 1, chloroplastic... 0.04 OrthoFinder output from all 47 species
Msp_g04505 RER1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g10890 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc09g011340.3.1 LCD1, Solyc09g011340 Protein RETICULATA, chloroplastic OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004526 ribonuclease P activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004549 tRNA-specific ribonuclease activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR021825 RETICULATA-related 212 393
No external refs found!