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  5. Mp1g12380.1

Mp1g12380.1 (EMB33, SUS2, EMB177, EMB14)


Aliases : EMB33, SUS2, EMB177, EMB14

Description : protein factor PRPF8/SUS2 of U5 small nuclear ribonucleoprotein particle (snRNP)


Gene families : OG0003463 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003463_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g12380.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00089870 EMB33, SUS2,... RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder output from all 47 species
AT1G80070 EMB33, SUS2,... Pre-mRNA-processing-splicing factor 0.05 OrthoFinder output from all 47 species
Ala_g15277 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.05 OrthoFinder output from all 47 species
Als_g19020 EMB33, SUS2,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g29416 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.02 OrthoFinder output from all 47 species
Aob_g16557 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.02 OrthoFinder output from all 47 species
Aop_g13684 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.05 OrthoFinder output from all 47 species
Ceric.07G006500.1 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000093.136 EMB33, SUS2,... Pre-mRNA-processing-splicing factor 8A OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000093.137 EMB33, SUS2,... RNA processing.RNA splicing.U2-type-intron-specific... 0.06 OrthoFinder output from all 47 species
Cre01.g016050 EMB33, SUS2,... RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Dcu_g02064 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.05 OrthoFinder output from all 47 species
GSVIVT01017346001 EMB33, SUS2,... RNA processing.RNA splicing.U2-type-intron-specific... 0.06 OrthoFinder output from all 47 species
Gb_00344 EMB33, SUS2,... protein factor PRPF8/SUS2 of U5 small nuclear... 0.05 OrthoFinder output from all 47 species
LOC_Os05g07050.1 EMB33, SUS2,... protein factor PRPF8/SUS2 of U5 small nuclear... 0.02 OrthoFinder output from all 47 species
LOC_Os06g07080.1 EMB33, SUS2,... protein factor PRPF8/SUS2 of U5 small nuclear... 0.02 OrthoFinder output from all 47 species
Len_g05313 EMB33, SUS2,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g05452 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.03 OrthoFinder output from all 47 species
Len_g21117 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.04 OrthoFinder output from all 47 species
Len_g31288 EMB33, SUS2,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g44858 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.02 OrthoFinder output from all 47 species
Lfl_g02476 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.02 OrthoFinder output from all 47 species
MA_7388g0020 EMB33, SUS2,... protein factor PRPF8/SUS2 of U5 small nuclear... 0.06 OrthoFinder output from all 47 species
Msp_g13516 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.02 OrthoFinder output from all 47 species
Pir_g09836 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.04 OrthoFinder output from all 47 species
Sam_g18054 No alias protein factor *(PRPF8/SUS2) of MAC... 0.01 OrthoFinder output from all 47 species
Smo173603 EMB33, SUS2,... RNA processing.RNA splicing.U2-type-intron-specific... 0.06 OrthoFinder output from all 47 species
Solyc07g008880.3.1 EMB33, SUS2,... protein factor PRPF8/SUS2 of U5 small nuclear... 0.07 OrthoFinder output from all 47 species
Spa_g12840 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.03 OrthoFinder output from all 47 species
Tin_g07648 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.03 OrthoFinder output from all 47 species
Zm00001e036397_P001 EMB33, SUS2,... protein factor PRPF8/SUS2 of U5 small nuclear... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
MF GO:0017070 U6 snRNA binding IEA Interproscan
MF GO:0030623 U5 snRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR012592 PROCN 416 821
IPR012984 PROCT 2232 2352
IPR019582 RRM_spliceosomal_PrP8 1006 1096
IPR021983 PRP8_domainIV 1780 2009
IPR000555 JAMM/MPN+_dom 2121 2219
IPR012591 PRO8NT 75 226
IPR019581 Prp8_U5-snRNA-bd 1230 1363
IPR019580 Prp8_U6-snRNA-bd 1462 1620
No external refs found!