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  5. Mp1g11620.1

Mp1g11620.1 (U2A')


Aliases : U2A'

Description : protein factor U2A of U2 small nuclear ribonucleoprotein particle (snRNP)


Gene families : OG0005171 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005171_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g11620.1

Target Alias Description ECC score Gene Family Method Actions
Als_g21682 U2A' component *(U2A) of U2 snRNP complex & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g10647 U2A' component *(U2A) of U2 snRNP complex & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g09699 U2A' component *(U2A) of U2 snRNP complex & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.12G006500.1 U2A', Ceric.12G006500 component *(U2A) of U2 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Cre16.g679600 U2A' RNA processing.RNA splicing.U2-type-intron-specific... 0.01 OrthoFinder output from all 47 species
Dde_g18836 U2A' component *(U2A) of U2 snRNP complex & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g13396 U2A' component *(U2A) of U2 snRNP complex & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g07663 U2A' component *(U2A) of U2 snRNP complex & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e006375_P001 U2A', Zm00001e006375 protein factor U2A of U2 small nuclear ribonucleoprotein... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000228 nuclear chromosome IEP HCCA
MF GO:0000287 magnesium ion binding IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005694 chromosome IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008192 RNA guanylyltransferase activity IEP HCCA
MF GO:0008193 tRNA guanylyltransferase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016556 mRNA modification IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0030014 CCR4-NOT complex IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
MF GO:0031491 nucleosome binding IEP HCCA
BP GO:0032259 methylation IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0070568 guanylyltransferase activity IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0080009 mRNA methylation IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA

No InterPro domains available for this sequence

No external refs found!