Mp1g08720.1

Description : component NOT3/5 of mRNA deadenylation CCR4-NOT complex

Gene families : OG0003951 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003951_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Mp1g08720.1

Target	Alias	Description	ECC score	Gene Family Method
Adi_g021088	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.02	OrthoFinder output from all 47 species
Aob_g23408	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.02	OrthoFinder output from all 47 species
Ppi_g05930	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0040.g012446	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
CC	GO:0018995	host cellular component	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0033643	host cell part	None	Extended
CC	GO:0033646	host intracellular part	None	Extended
CC	GO:0033647	host intracellular organelle	None	Extended
CC	GO:0033648	host intracellular membrane-bounded organelle	None	Extended
CC	GO:0042025	host cell nucleus	IEA	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
BP	GO:0005996	monosaccharide metabolic process	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006334	nucleosome assembly	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
MF	GO:0008375	acetylglucosaminyltransferase activity	IEP	HCCA
BP	GO:0019321	pentose metabolic process	IEP	HCCA
BP	GO:0019566	arabinose metabolic process	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
CC	GO:0032993	protein-DNA complex	IEP	HCCA
BP	GO:0034728	nucleosome organization	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
CC	GO:0044815	DNA packaging complex	IEP	HCCA
BP	GO:0046373	L-arabinose metabolic process	IEP	HCCA
MF	GO:0046556	alpha-L-arabinofuranosidase activity	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0065004	protein-DNA complex assembly	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
BP	GO:0071824	protein-DNA complex subunit organization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007207	Not_N	4	229
IPR007282	NOT2/3/5_C	787	920

External Links

No external refs found!

Mp1g08720.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation