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  5. Mp1g06890.1

Mp1g06890.1 (emb1507)


Aliases : emb1507

Description : RNA helicase (Brr2)


Gene families : OG0001175 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001175_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g06890.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00114710 emb1507,... RNA processing.RNA splicing.spliceosome... 0.12 OrthoFinder output from all 47 species
AMTR_s00077p00041680 emb1507,... DExH-box ATP-dependent RNA helicase DExH12... 0.01 OrthoFinder output from all 47 species
AMTR_s00110p00146400 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH14... 0.02 OrthoFinder output from all 47 species
AT1G20960 emb1507 U5 small nuclear ribonucleoprotein helicase, putative 0.02 OrthoFinder output from all 47 species
Adi_g117139 emb1507 RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g29910 No alias RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g01991 emb1507 RNA helicase *(Brr2) & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g40053 emb1507 RNA helicase *(Brr2) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g08117 emb1507 RNA helicase *(Brr2) & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g09018 No alias RNA helicase *(Brr2) & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene33378.t1 Aspi01Gene33378 RNA helicase *(Brr2) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene33379.t1 Aspi01Gene33379 RNA helicase *(Brr2) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g05344 No alias RNA helicase *(Brr2) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g05989 emb1507 RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.1Z134800.1 Ceric.1Z134800 not classified & original description: pacid=50597112... 0.02 OrthoFinder output from all 47 species
Ceric.1Z263400.1 Ceric.1Z263400 RNA helicase *(Brr2) & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.31G022500.1 emb1507, Ceric.31G022500 RNA helicase *(Brr2) & original description:... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000865.27 emb1507 DExH-box ATP-dependent RNA helicase DExH12... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000865.28 emb1507 DExH-box ATP-dependent RNA helicase DExH12... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000865.29 emb1507 DExH-box ATP-dependent RNA helicase DExH12... 0.01 OrthoFinder output from all 47 species
Cre17.g744147 emb1507 RNA processing.RNA splicing.spliceosome... 0.09 OrthoFinder output from all 47 species
Dac_g02389 emb1507 RNA helicase *(Brr2) & original description: none 0.07 OrthoFinder output from all 47 species
Dac_g12553 No alias RNA helicase *(Brr2) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g12406 No alias RNA helicase *(Brr2) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g19260 emb1507 RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g29920 emb1507 RNA helicase *(Brr2) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g04070 No alias RNA helicase *(Brr2) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01007875001 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.04 OrthoFinder output from all 47 species
GSVIVT01010769001 emb1507 DExH-box ATP-dependent RNA helicase DExH12... 0.09 OrthoFinder output from all 47 species
Gb_18049 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.05 OrthoFinder output from all 47 species
Gb_27895 emb1507 RNA helicase (Brr2) 0.12 OrthoFinder output from all 47 species
LOC_Os02g01740.1 emb1507, LOC_Os02g01740 RNA helicase (Brr2) 0.03 OrthoFinder output from all 47 species
LOC_Os03g11470.1 LOC_Os03g11470 DExH-box ATP-dependent RNA helicase DExH14... 0.06 OrthoFinder output from all 47 species
Len_g08641 emb1507 RNA helicase *(Brr2) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g21125 No alias RNA helicase *(Brr2) & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g05048 emb1507 RNA helicase *(Brr2) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g09106 No alias RNA helicase *(Brr2) & original description: none 0.02 OrthoFinder output from all 47 species
MA_8113344g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.04 OrthoFinder output from all 47 species
MA_81219g0020 emb1507 DExH-box ATP-dependent RNA helicase DExH12... 0.04 OrthoFinder output from all 47 species
MA_81219g0030 emb1507 DExH-box ATP-dependent RNA helicase DExH12... 0.05 OrthoFinder output from all 47 species
MA_823844g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.03 OrthoFinder output from all 47 species
MA_930633g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.03 OrthoFinder output from all 47 species
Pir_g09832 emb1507 RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g09250 emb1507 RNA helicase *(Brr2) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g18045 No alias RNA helicase *(Brr2) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g36113 No alias RNA helicase *(Brr2) & original description: none 0.02 OrthoFinder output from all 47 species
Smo144158 emb1507 RNA processing.RNA splicing.spliceosome... 0.08 OrthoFinder output from all 47 species
Smo178863 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.02 OrthoFinder output from all 47 species
Smo410613 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.02 OrthoFinder output from all 47 species
Solyc06g082100.4.1 emb1507, Solyc06g082100 RNA helicase (Brr2) 0.06 OrthoFinder output from all 47 species
Spa_g39786 No alias RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g52342 emb1507 RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g07743 emb1507 RNA helicase *(Brr2) & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e035676_P001 emb1507, Zm00001e035676 RNA helicase (Brr2) 0.09 OrthoFinder output from all 47 species
Zm00001e038727_P001 Zm00001e038727 DExH-box ATP-dependent RNA helicase DExH14... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0017069 snRNA binding IEP HCCA
MF GO:0017070 U6 snRNA binding IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
MF GO:0030623 U5 snRNA binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR004179 Sec63-dom 1842 2159
IPR041094 Brr2_helicase_PWI 268 377
IPR004179 Sec63-dom 1008 1310
IPR011545 DEAD/DEAH_box_helicase_dom 1355 1524
IPR011545 DEAD/DEAH_box_helicase_dom 509 683
IPR001650 Helicase_C 735 884
No external refs found!