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  5. Mp1g06750.1

Mp1g06750.1


Description : RNA helicase (Prp5)


Gene families : OG0003781 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003781_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g06750.1
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00136p00027550 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome... 0.03 OrthoFinder output from all 47 species
AT1G20920 No alias P-loop containing nucleoside triphosphate hydrolases... 0.06 OrthoFinder output from all 47 species
AT3G09620 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 OrthoFinder output from all 47 species
Als_g28448 No alias RNA helicase *(RCF1) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g03604 No alias RNA helicase *(RCF1) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene01686.t1 Aspi01Gene01686 RNA helicase *(RCF1) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g05329 No alias RNA helicase *(RCF1) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.37G065700.1 Ceric.37G065700 RNA helicase *(RCF1) & original description:... 0.02 OrthoFinder output from all 47 species
Dcu_g06489 No alias RNA helicase *(RCF1) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01023849001 No alias DEAD-box ATP-dependent RNA helicase 45 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_03798 No alias RNA helicase (Prp5) 0.02 OrthoFinder output from all 47 species
Len_g49748 No alias RNA helicase *(RCF1) & original description: none 0.03 OrthoFinder output from all 47 species
MA_175476g0010 No alias RNA helicase (Prp5) 0.05 OrthoFinder output from all 47 species
Ore_g10272 No alias RNA helicase *(RCF1) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g11401 No alias RNA helicase *(RCF1) & original description: none 0.03 OrthoFinder output from all 47 species
Smo6590 No alias DEAD-box ATP-dependent RNA helicase 42 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Solyc12g098700.1.1 Solyc12g098700 RNA helicase (Prp5) 0.12 OrthoFinder output from all 47 species
Zm00001e040204_P001 Zm00001e040204 RNA helicase (Prp5) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 560 731
IPR001650 Helicase_C 769 877
No external refs found!