Mp1g05400.1

Description : Zinc finger CCCH domain-containing protein 55 OS=Oryza sativa subsp. japonica (sp|q6yyc0|c3h55_orysj : 82.8)

Gene families : OG0000859 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000859_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Mp1g05400.1
Cluster	HCCA: Cluster_3

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00071p00110320	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C3H zinc...	0.04	OrthoFinder output from all 47 species
AMTR_s00154p00086540	evm_27.TU.AmTr_v1...	Zinc finger CCCH domain-containing protein 38...	0.04	OrthoFinder output from all 47 species
AMTR_s00154p00087040	evm_27.TU.AmTr_v1...	No description available	0.03	OrthoFinder output from all 47 species
AT3G18640	No alias	Zinc finger C-x8-C-x5-C-x3-H type family protein	0.03	OrthoFinder output from all 47 species
Adi_g003566	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g020080	No alias	component *(FES1) of FRI-C transcription effector...	0.04	OrthoFinder output from all 47 species
Adi_g044113	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Adi_g051624	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g086845	No alias	component *(FES1) of FRI-C transcription effector...	0.05	OrthoFinder output from all 47 species
Ala_g14556	No alias	component *(FES1) of FRI-C transcription effector...	0.05	OrthoFinder output from all 47 species
Ala_g33431	No alias	component *(FES1) of FRI-C transcription effector...	0.04	OrthoFinder output from all 47 species
Ala_g38718	No alias	component *(FES1) of FRI-C transcription effector...	0.02	OrthoFinder output from all 47 species
Als_g05138	No alias	component *(FES1) of FRI-C transcription effector...	0.04	OrthoFinder output from all 47 species
Als_g21455	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g22679	No alias	component *(FES1) of FRI-C transcription effector...	0.06	OrthoFinder output from all 47 species
Aob_g28684	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g08771	No alias	component *(FES1) of FRI-C transcription effector...	0.02	OrthoFinder output from all 47 species
Aop_g31626	No alias	component *(FES1) of FRI-C transcription effector...	0.03	OrthoFinder output from all 47 species
Aspi01Gene71346.t1	Aspi01Gene71346	component *(FES1) of FRI-C transcription effector...	0.02	OrthoFinder output from all 47 species
Cba_g01885	No alias	component *(FES1) of FRI-C transcription effector...	0.02	OrthoFinder output from all 47 species
Cba_g12381	No alias	component *(FES1) of FRI-C transcription effector...	0.02	OrthoFinder output from all 47 species
Cba_g23169	No alias	component *(FES1) of FRI-C transcription effector...	0.02	OrthoFinder output from all 47 species
Cba_g29388	No alias	component *(FES1) of FRI-C transcription effector...	0.01	OrthoFinder output from all 47 species
Ceric.08G010400.1	Ceric.08G010400	component *(FES1) of FRI-C transcription effector...	0.02	OrthoFinder output from all 47 species
Ceric.09G003600.1	Ceric.09G003600	component *(FES1) of FRI-C transcription effector...	0.07	OrthoFinder output from all 47 species
Ceric.20G066500.1	Ceric.20G066500	component *(FES1) of FRI-C transcription effector...	0.08	OrthoFinder output from all 47 species
Ceric.20G084000.1	Ceric.20G084000	component *(FES1) of FRI-C transcription effector...	0.05	OrthoFinder output from all 47 species
Ceric.29G050700.1	Ceric.29G050700	component *(FES1) of FRI-C transcription effector...	0.03	OrthoFinder output from all 47 species
Cre01.g003450	No alias	No description available	0.03	OrthoFinder output from all 47 species
Dac_g06929	No alias	component *(FES1) of FRI-C transcription effector...	0.03	OrthoFinder output from all 47 species
Dac_g12746	No alias	component *(FES1) of FRI-C transcription effector...	0.02	OrthoFinder output from all 47 species
Dcu_g07178	No alias	component *(FES1) of FRI-C transcription effector...	0.06	OrthoFinder output from all 47 species
Ehy_g16622	No alias	component *(FES1) of FRI-C transcription effector...	0.03	OrthoFinder output from all 47 species
Ehy_g16623	No alias	component *(FES1) of FRI-C transcription effector...	0.02	OrthoFinder output from all 47 species
Ehy_g18865	No alias	component *(FES1) of FRI-C transcription effector...	0.02	OrthoFinder output from all 47 species
Ehy_g26937	No alias	component *(FES1) of FRI-C transcription effector...	0.03	OrthoFinder output from all 47 species
GSVIVT01008114001	No alias	Zinc finger CCCH domain-containing protein 38...	0.05	OrthoFinder output from all 47 species
GSVIVT01010035001	ACCD	RNA biosynthesis.transcriptional activation.C3H zinc...	0.09	OrthoFinder output from all 47 species
Gb_00875	No alias	C3H zinc finger transcription factor	0.06	OrthoFinder output from all 47 species
Gb_19122	No alias	C3H zinc finger transcription factor	0.08	OrthoFinder output from all 47 species
Gb_26302	No alias	C3H zinc finger transcription factor	0.05	OrthoFinder output from all 47 species
LOC_Os05g41790.1	LOC_Os05g41790	C3H zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
LOC_Os08g04170.1	LOC_Os08g04170	C3H zinc finger transcription factor	0.12	OrthoFinder output from all 47 species
Len_g20647	No alias	component *(FES1) of FRI-C transcription effector...	0.06	OrthoFinder output from all 47 species
Len_g31683	No alias	component *(FES1) of FRI-C transcription effector...	0.02	OrthoFinder output from all 47 species
Lfl_g05738	No alias	component *(FES1) of FRI-C transcription effector...	0.05	OrthoFinder output from all 47 species
Lfl_g29094	No alias	component *(FES1) of FRI-C transcription effector...	0.02	OrthoFinder output from all 47 species
MA_10435667g0010	No alias	Zinc finger CCCH domain-containing protein 38...	0.03	OrthoFinder output from all 47 species
MA_10435667g0020	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_111475g0010	No alias	Zinc finger CCCH domain-containing protein 55 OS=Oryza...	0.08	OrthoFinder output from all 47 species
MA_111475g0020	No alias	no hits & (original description: none)	0.06	OrthoFinder output from all 47 species
MA_321233g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_8408g0030	No alias	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Msp_g14444	No alias	component *(FES1) of FRI-C transcription effector...	0.02	OrthoFinder output from all 47 species
Msp_g15688	No alias	component *(FES1) of FRI-C transcription effector...	0.02	OrthoFinder output from all 47 species
Nbi_g04479	No alias	component *(FES1) of FRI-C transcription effector...	0.04	OrthoFinder output from all 47 species
Nbi_g33981	No alias	component *(FES1) of FRI-C transcription effector...	0.02	OrthoFinder output from all 47 species
Ore_g08246	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g30501	No alias	component *(FES1) of FRI-C transcription effector...	0.02	OrthoFinder output from all 47 species
Ore_g37073	No alias	component *(FES1) of FRI-C transcription effector...	0.04	OrthoFinder output from all 47 species
Ore_g44437	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g18853	No alias	component *(FES1) of FRI-C transcription effector...	0.02	OrthoFinder output from all 47 species
Pir_g19528	No alias	component *(FES1) of FRI-C transcription effector...	0.02	OrthoFinder output from all 47 species
Pir_g41479	No alias	component *(FES1) of FRI-C transcription effector...	0.04	OrthoFinder output from all 47 species
Pir_g61674	No alias	component *(FES1) of FRI-C transcription effector...	0.02	OrthoFinder output from all 47 species
Pnu_g26023	No alias	component *(FES1) of FRI-C transcription effector...	0.03	OrthoFinder output from all 47 species
Ppi_g08786	No alias	component *(FES1) of FRI-C transcription effector...	0.04	OrthoFinder output from all 47 species
Ppi_g11003	No alias	component *(FES1) of FRI-C transcription effector...	0.04	OrthoFinder output from all 47 species
Ppi_g43758	No alias	component *(FES1) of FRI-C transcription effector...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000565	No alias	component *(FES1) of FRI-C transcription effector...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g011981	No alias	component *(FES1) of FRI-C transcription effector...	0.03	OrthoFinder output from all 47 species
Sam_g30142	No alias	component *(FES1) of FRI-C transcription effector...	0.01	OrthoFinder output from all 47 species
Sam_g39875	No alias	component *(FES1) of FRI-C transcription effector...	0.02	OrthoFinder output from all 47 species
Solyc03g006350.3.1	FES1, Solyc03g006350	C3H zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
Solyc04g064800.4.1	Solyc04g064800	C3H zinc finger transcription factor	0.02	OrthoFinder output from all 47 species
Solyc06g069440.3.1	Solyc06g069440	Zinc finger CCCH domain-containing protein 38...	0.04	OrthoFinder output from all 47 species
Spa_g08435	No alias	component *(FES1) of FRI-C transcription effector...	0.04	OrthoFinder output from all 47 species
Spa_g17866	No alias	component *(FES1) of FRI-C transcription effector...	0.02	OrthoFinder output from all 47 species
Spa_g19280	No alias	component *(FES1) of FRI-C transcription effector...	0.03	OrthoFinder output from all 47 species
Spa_g41981	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g53143	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g10851	No alias	component *(FES1) of FRI-C transcription effector...	0.04	OrthoFinder output from all 47 species
Tin_g20286	No alias	component *(FES1) of FRI-C transcription effector...	0.03	OrthoFinder output from all 47 species
Tin_g26553	No alias	component *(FES1) of FRI-C transcription effector...	0.02	OrthoFinder output from all 47 species
Zm00001e000843_P002	Zm00001e000843	Zinc finger CCCH domain-containing protein 55 OS=Oryza...	0.02	OrthoFinder output from all 47 species
Zm00001e032035_P001	FES1, Zm00001e032035	C3H zinc finger transcription factor	0.02	OrthoFinder output from all 47 species
Zm00001e040314_P001	Zm00001e040314	C3H zinc finger transcription factor	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005694	chromosome	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0006479	protein methylation	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	None	Extended
MF	GO:0008170	N-methyltransferase activity	None	Extended
BP	GO:0008213	protein alkylation	None	Extended
MF	GO:0008276	protein methyltransferase activity	None	Extended
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
MF	GO:0016278	lysine N-methyltransferase activity	None	Extended
MF	GO:0016279	protein-lysine N-methyltransferase activity	None	Extended
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016571	histone methylation	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0018022	peptidyl-lysine methylation	None	Extended
MF	GO:0018024	histone lysine N-methyltransferase activity	IEA	Interproscan
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018205	peptidyl-lysine modification	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0034968	histone lysine methylation	IEA	Interproscan
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0042054	histone methyltransferase activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
MF	GO:0046872	metal ion binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000123	histone acetyltransferase complex	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006476	protein deacetylation	IEP	HCCA
BP	GO:0016575	histone deacetylation	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
CC	GO:0018995	host cellular component	IEP	HCCA
CC	GO:0031248	protein acetyltransferase complex	IEP	HCCA
CC	GO:0033643	host cell part	IEP	HCCA
CC	GO:0033646	host intracellular part	IEP	HCCA
CC	GO:0033647	host intracellular organelle	IEP	HCCA
CC	GO:0033648	host intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0035601	protein deacylation	IEP	HCCA
CC	GO:0042025	host cell nucleus	IEP	HCCA
CC	GO:0070461	SAGA-type complex	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0098732	macromolecule deacylation	IEP	HCCA
CC	GO:1902493	acetyltransferase complex	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000571	Znf_CCCH	417	436
IPR013257	SRI	1036	1114

External Links

No external refs found!

Mp1g05400.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation