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  5. Mp1g01080.1

Mp1g01080.1


Description : CORVET-specific component VPS3 of HOPS/CORVET membrane tethering complexes


Gene families : OG0006416 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006416_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g01080.1
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00129430 evm_27.TU.AmTr_v1... Vesicle trafficking.target membrane... 0.03 OrthoFinder output from all 47 species
Als_g23233 No alias CORVET-specific component *(VPS3) of HOPS/CORVET... 0.02 OrthoFinder output from all 47 species
Aob_g10925 No alias CORVET-specific component *(VPS3) of HOPS/CORVET... 0.03 OrthoFinder output from all 47 species
Aop_g11936 No alias CORVET-specific component *(VPS3) of HOPS/CORVET... 0.02 OrthoFinder output from all 47 species
Ceric.1Z286500.1 Ceric.1Z286500 not classified & original description: pacid=50637237... 0.04 OrthoFinder output from all 47 species
Ceric.24G003400.1 Ceric.24G003400 CORVET-specific component *(VPS3) of HOPS/CORVET... 0.02 OrthoFinder output from all 47 species
Cre17.g709400 No alias Vesicle trafficking.target membrane... 0.01 OrthoFinder output from all 47 species
Dcu_g12676 No alias CORVET-specific component *(VPS3) of HOPS/CORVET... 0.05 OrthoFinder output from all 47 species
Dde_g05948 No alias CORVET-specific component *(VPS3) of HOPS/CORVET... 0.02 OrthoFinder output from all 47 species
LOC_Os05g01360.1 LOC_Os05g01360 CORVET-specific component VPS3 of HOPS/CORVET membrane... 0.06 OrthoFinder output from all 47 species
Lfl_g10679 No alias CORVET-specific component *(VPS3) of HOPS/CORVET... 0.03 OrthoFinder output from all 47 species
MA_1271g0010 No alias CORVET-specific component VPS3 of HOPS/CORVET membrane... 0.04 OrthoFinder output from all 47 species
Pir_g13040 No alias CORVET-specific component *(VPS3) of HOPS/CORVET... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0075.g017384 No alias CORVET-specific component *(VPS3) of HOPS/CORVET... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
MF GO:0019239 deaminase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
InterPro domains Description Start Stop
IPR001180 CNH_dom 468 632
IPR000547 Clathrin_H-chain/VPS_repeat 1074 1160
IPR019452 VPS39/TGF_beta_rcpt-assoc_1 844 921
IPR019453 VPS39/TGF_beta_rcpt-assoc_2 1174 1280
No external refs found!