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  5. Zm00001e042214_P001

Zm00001e042214_P001 (Zm00001e042214)


Aliases : Zm00001e042214

Description : no hits & (original description: none)


Gene families : OG0005880 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005880_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e042214_P001
Cluster HCCA: Cluster_183

Target Alias Description ECC score Gene Family Method Actions
Als_g50338 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g69062 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0017.g014468 No alias not classified & original description: CDS=1-2799 0.04 OrthoFinder output from all 47 species
Cba_g15712 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.28G030000.1 Ceric.28G030000 not classified & original description: pacid=50570416... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000893.5 No alias No description available 0.05 OrthoFinder output from all 47 species
Cre16.g685200 No alias No description available 0.09 OrthoFinder output from all 47 species
Dac_g19099 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g40735 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01012163001 No alias Polyadenylate-binding protein 2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
LOC_Os04g52200.1 LOC_Os04g52200 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Lfl_g16585 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Mp8g17720.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0122.g021459 No alias not classified & original description: CDS=203-2689 0.02 OrthoFinder output from all 47 species
Sam_g14275 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo182522 No alias Polyadenylate-binding protein 8 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Solyc02g081940.3.1 Solyc02g081940 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Spa_g15174 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g02870 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
CC GO:0034457 Mpp10 complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 760 827
IPR000504 RRM_dom 660 734
IPR000504 RRM_dom 5 73
IPR000504 RRM_dom 347 417
IPR000504 RRM_dom 540 602
No external refs found!