- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : ATUPF3, UPF3, Zm00001e040916
Description : component UPF3 of RNA quality control Exon Junction complex
Gene families : OG0002175 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002175_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00071p00188270 | ATUPF3, UPF3,... | RNA processing.RNA quality control Exon Junction complex... | 0.02 | OrthoFinder output from all 47 species | |
| AT1G33980 | ATUPF3, UPF3 | Smg-4/UPF3 family protein | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g019348 | ATUPF3, UPF3 | component *(UPF3) of RNA quality control Exon Junction... | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g11732 | ATUPF3, UPF3 | component *(UPF3) of RNA quality control Exon Junction... | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g21603 | ATUPF3, UPF3 | component *(UPF3) of RNA quality control Exon Junction... | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g05619 | ATUPF3, UPF3 | component *(UPF3) of RNA quality control Exon Junction... | 0.05 | OrthoFinder output from all 47 species | |
| Als_g20635 | ATUPF3, UPF3 | component *(UPF3) of RNA quality control Exon Junction... | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g09824 | ATUPF3, UPF3 | component *(UPF3) of RNA quality control Exon Junction... | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene04063.t2 | ATUPF3, UPF3,... | component *(UPF3) of RNA quality control Exon Junction... | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0038.g026324 | ATUPF3, UPF3 | component *(UPF3) of RNA quality control Exon Junction... | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g27966 | ATUPF3, UPF3 | component *(UPF3) of RNA quality control Exon Junction... | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g38478 | ATUPF3, UPF3 | component *(UPF3) of RNA quality control Exon Junction... | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g59737 | ATUPF3, UPF3 | component *(UPF3) of RNA quality control Exon Junction... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.07G016200.1 | ATUPF3, UPF3,... | component *(UPF3) of RNA quality control Exon Junction... | 0.08 | OrthoFinder output from all 47 species | |
| Ceric.34G019900.1 | ATUPF3, UPF3,... | component *(UPF3) of RNA quality control Exon Junction... | 0.06 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00020572.59 | ATUPF3, UPF3 | RNA processing.RNA quality control Exon Junction complex... | 0.01 | OrthoFinder output from all 47 species | |
| Dcu_g04069 | ATUPF3, UPF3 | component *(UPF3) of RNA quality control Exon Junction... | 0.07 | OrthoFinder output from all 47 species | |
| GSVIVT01023232001 | ATUPF3, UPF3 | RNA processing.RNA quality control Exon Junction complex... | 0.07 | OrthoFinder output from all 47 species | |
| LOC_Os04g35920.2 | ATUPF3, UPF3,... | component UPF3 of RNA quality control Exon Junction complex | 0.12 | OrthoFinder output from all 47 species | |
| Len_g07302 | ATUPF3, UPF3 | component *(UPF3) of RNA quality control Exon Junction... | 0.03 | OrthoFinder output from all 47 species | |
| Len_g22104 | ATUPF3, UPF3 | component *(UPF3) of RNA quality control Exon Junction... | 0.05 | OrthoFinder output from all 47 species | |
| Lfl_g04941 | ATUPF3, UPF3 | component *(UPF3) of RNA quality control Exon Junction... | 0.04 | OrthoFinder output from all 47 species | |
| MA_102917g0010 | ATUPF3, UPF3 | component UPF3 of RNA quality control Exon Junction complex | 0.06 | OrthoFinder output from all 47 species | |
| Mp1g05590.1 | ATUPF3, UPF3 | component UPF3 of RNA quality control Exon Junction complex | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g19706 | ATUPF3, UPF3 | component *(UPF3) of RNA quality control Exon Junction... | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g30459 | ATUPF3, UPF3 | component *(UPF3) of RNA quality control Exon Junction... | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g30090 | ATUPF3, UPF3 | component *(UPF3) of RNA quality control Exon Junction... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc01g103420.4.1 | ATUPF3, UPF3,... | component UPF3 of RNA quality control Exon Junction complex | 0.09 | OrthoFinder output from all 47 species | |
| Spa_g17421 | No alias | component *(UPF3) of RNA quality control Exon Junction... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g22612 | ATUPF3, UPF3 | component *(UPF3) of RNA quality control Exon Junction... | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g09311 | ATUPF3, UPF3 | component *(UPF3) of RNA quality control Exon Junction... | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g12324 | ATUPF3, UPF3 | component *(UPF3) of RNA quality control Exon Junction... | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0004386 | helicase activity | IEP | HCCA |
| MF | GO:0004652 | polynucleotide adenylyltransferase activity | IEP | HCCA |
| MF | GO:0004843 | cysteine-type deubiquitinase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006397 | mRNA processing | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| MF | GO:0008234 | cysteine-type peptidase activity | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| BP | GO:0016579 | protein deubiquitination | IEP | HCCA |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
| MF | GO:0019783 | ubiquitin-like protein peptidase activity | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| BP | GO:0043631 | RNA polyadenylation | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| MF | GO:0070566 | adenylyltransferase activity | IEP | HCCA |
| BP | GO:0070646 | protein modification by small protein removal | IEP | HCCA |
| BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0101005 | deubiquitinase activity | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR005120 | UPF3_dom | 7 | 167 |
| No external refs found! |