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  5. Zm00001e040897_P001

Zm00001e040897_P001 (Zm00001e040897)


Aliases : Zm00001e040897

Description : PsbP domain-containing protein 2, chloroplastic OS=Arabidopsis thaliana (sp|q8vy52|ppd2_arath : 189.0)


Gene families : OG0006850 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006850_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e040897_P001
Cluster HCCA: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
AT2G28605 No alias Photosystem II reaction center PsbP family protein 0.04 OrthoFinder output from all 47 species
Adi_g001537 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g11271 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0147.g053021 No alias not classified & original description: CDS=103-867 0.03 OrthoFinder output from all 47 species
Ceric.04G042500.1 Ceric.04G042500 not classified & original description: pacid=50630591... 0.03 OrthoFinder output from all 47 species
Dac_g37232 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26628 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01022331001 No alias PsbP domain-containing protein 2, chloroplastic... 0.1 OrthoFinder output from all 47 species
Lfl_g10907 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g10160 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g35950 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0118.g021226 No alias not classified & original description: CDS=1234-2040 0.04 OrthoFinder output from all 47 species
Smo91861 No alias PsbP domain-containing protein 2, chloroplastic... 0.04 OrthoFinder output from all 47 species
Solyc04g009420.3.1 Solyc04g009420 PsbP domain-containing protein 2, chloroplastic... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
CC GO:0009523 photosystem II IEA Interproscan
CC GO:0009654 photosystem II oxygen evolving complex IEA Interproscan
BP GO:0015979 photosynthesis IEA Interproscan
CC GO:0019898 extrinsic component of membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004418 hydroxymethylbilane synthase activity IEP HCCA
MF GO:0004784 superoxide dismutase activity IEP HCCA
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006801 superoxide metabolic process IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051920 peroxiredoxin activity IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002683 PsbP_C 92 245
No external refs found!