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  5. Zm00001e040664_P001

Zm00001e040664_P001 (Zm00001e040664)


Aliases : Zm00001e040664

Description : no hits & (original description: none)


Gene families : OG0000559 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000559_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e040664_P001

Target Alias Description ECC score Gene Family Method Actions
Adi_g058770 ATMBD6, MBD6 methylation reader *(MBD5-6) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g08757 MBD05, MBD5, ATMBD5 methylation reader *(MBD5-6) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g15671 No alias methylation reader *(MBD5-6) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g58288 ATMBD6, MBD6 methylation reader *(MBD5-6) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g11201 No alias methylation reader *(MBD5-6) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene12062.t1 ATMBD6, MBD6,... methylation reader *(MBD5-6) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g12263 MBD05, MBD5, ATMBD5 methylation reader *(MBD5-6) & original description: none 0.02 OrthoFinder output from all 47 species
MA_92628g0020 MBD05, MBD5, ATMBD5 methylation reader (MBD5-6) 0.03 OrthoFinder output from all 47 species
Ore_g16367 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g19245 No alias methylation reader *(MBD5-6) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc08g080690.4.1 Solyc08g080690 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0042025 host cell nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001739 Methyl_CpG_DNA-bd 164 214
No external refs found!