1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001e040409_P001

Zm00001e040409_P001 (UVH6, ATXPD, Zm00001e040409)


Aliases : UVH6, ATXPD, Zm00001e040409

Description : subunit XPD of multifunctional TFIIh complex. component XPD of TFIIh basal transcription factor complex


Gene families : OG0004711 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004711_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e040409_P001

Target Alias Description ECC score Gene Family Method Actions
Als_g13498 UVH6, ATXPD component *(XPD) of TFIIh basal transcription factor... 0.04 OrthoFinder output from all 47 species
Dcu_g07727 UVH6, ATXPD component *(XPD) of TFIIh basal transcription factor... 0.04 OrthoFinder output from all 47 species
Pnu_g06913 UVH6, ATXPD component *(XPD) of TFIIh basal transcription factor... 0.02 OrthoFinder output from all 47 species
Solyc06g008970.4.1 UVH6, ATXPD,... subunit XPD of multifunctional TFIIh complex. component... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003678 DNA helicase activity IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006139 nucleobase-containing compound metabolic process IEA Interproscan
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR010614 DEAD_2 72 259
IPR010643 HBB 273 415
IPR006555 ATP-dep_Helicase_C 527 700
No external refs found!