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  5. Zm00001e040209_P002

Zm00001e040209_P002 (PDE318, Zm00001e040209)


Aliases : PDE318, Zm00001e040209

Description : Nucleolar GTP-binding protein 1 OS=Arabidopsis thaliana (sp|q9c6i8|nog1_arath : 117.0)


Gene families : OG0006383 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006383_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e040209_P002
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AT1G80770 PDE318 P-loop containing nucleoside triphosphate hydrolases... 0.07 OrthoFinder output from all 47 species
Adi_g021598 PDE318 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g09822 PDE318 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cre08.g384355 No alias No description available 0.02 OrthoFinder output from all 47 species
GSVIVT01022468001 PDE318 Nucleolar GTP-binding protein 1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Gb_02848 PDE318 Nucleolar GTP-binding protein 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os08g06230.1 PDE318, LOC_Os08g06230 Nucleolar GTP-binding protein 1 OS=Arabidopsis thaliana... 0.11 OrthoFinder output from all 47 species
Len_g15082 PDE318 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10431481g0020 PDE318 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Sam_g18094 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo443180 PDE318 Nucleolar GTP-binding protein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc09g090460.3.1 PDE318, Solyc09g090460 Nucleolar GTP-binding protein 1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Spa_g13322 PDE318 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR030389 G_FEOB_dom 266 321
IPR041623 NOG1_N 102 260
IPR010674 NOG1_Rossman_fold_dom 330 387
No external refs found!