Zm00001e039748_P001 (STA1, EMB2770, Zm00001e039748)

Aliases : STA1, EMB2770, Zm00001e039748

Description : protein factor PRPF6/PRP1/STA1 of U5 small nuclear ribonucleoprotein particle (snRNP)

Gene families : OG0006034 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006034_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e039748_P001

Target	Alias	Description	ECC score	Gene Family Method
Gb_02940	STA1, EMB2770	protein factor PRPF6/PRP1/STA1 of U5 small nuclear...	0.04	OrthoFinder output from all 47 species
LOC_Os01g15860.1	STA1, EMB2770,...	protein factor PRPF6/PRP1/STA1 of U5 small nuclear...	0.06	OrthoFinder output from all 47 species
Len_g00746	STA1, EMB2770	component *(PRPF6) of U5 snRNP complex & original...	0.04	OrthoFinder output from all 47 species
Lfl_g13254	STA1, EMB2770	component *(PRPF6) of U5 snRNP complex & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002228	STA1, EMB2770	regulatory protein of poly(A) RNA polymerase activity &...	0.02	OrthoFinder output from all 47 species
Smo172051	STA1, EMB2770	RNA processing.RNA splicing.U2-type-intron-specific...	0.04	OrthoFinder output from all 47 species
Tin_g02882	STA1, EMB2770	component *(PRPF6) of U5 snRNP complex & original...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR010491	PRP1_N	33	196

External Links

No external refs found!