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  5. Zm00001e038951_P001

Zm00001e038951_P001 (Zm00001e038951)


Aliases : Zm00001e038951

Description : Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia (sp|q9zr39|u2a2a_nicpl : 89.4)


Gene families : OG0004459 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004459_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e038951_P001

Target Alias Description ECC score Gene Family Method Actions
AT2G33435 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.06 OrthoFinder output from all 47 species
Adi_g084143 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g108728 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g04168 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g13459 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g13184 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09620 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0017.g014511 No alias not classified & original description: CDS=1-3180 0.05 OrthoFinder output from all 47 species
Ceric.29G067000.1 Ceric.29G067000 not classified & original description: pacid=50625433... 0.02 OrthoFinder output from all 47 species
Dcu_g38756 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g07040 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g21118 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01027871001 No alias Splicing factor U2af large subunit A OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
Gb_32245 No alias Splicing factor U2af large subunit A OS=Triticum... 0.04 OrthoFinder output from all 47 species
LOC_Os03g04520.2 LOC_Os03g04520 Splicing factor U2af large subunit B OS=Nicotiana... 0.12 OrthoFinder output from all 47 species
Lfl_g38674 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
MA_10110465g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Nbi_g07673 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g15941 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g43782 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g19439 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sam_g24443 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g24444 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g090420.4.1 Solyc09g090420 Splicing factor U2af large subunit B OS=Oryza sativa... 0.08 OrthoFinder output from all 47 species
Spa_g40273 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 473 545
IPR000504 RRM_dom 580 647
No external refs found!