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  5. Zm00001e038811_P001

Zm00001e038811_P001 (PAT1, Zm00001e038811)


Aliases : PAT1, Zm00001e038811

Description : transcription factor (GRAS)


Gene families : OG0000550 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000550_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e038811_P001
Cluster HCCA: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00043p00136400 PAT1,... RNA biosynthesis.transcriptional activation.GRAS... 0.02 OrthoFinder output from all 47 species
Als_g10196 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g12263 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene13768.t1 PAT1, Aspi01Gene13768 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene48189.t1 PAT1, Aspi01Gene48189 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g05689 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07624 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01007007001 SCL21 RNA biosynthesis.transcriptional activation.GRAS... 0.02 OrthoFinder output from all 47 species
Gb_31684 PAT1 transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
Gb_40278 SCL5 transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
LOC_Os01g65900.1 SCL1, LOC_Os01g65900 transcription factor (GRAS) 0.04 OrthoFinder output from all 47 species
Lfl_g28608 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_10432093g0010 PAT1 transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
MA_8789384g0010 SCL1 transcription factor (GRAS) 0.04 OrthoFinder output from all 47 species
Msp_g10420 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g22889 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g20467 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g29195 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g55616 SCL5 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019208 phosphatase regulator activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0019888 protein phosphatase regulator activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
InterPro domains Description Start Stop
IPR005202 TF_GRAS 174 544
No external refs found!