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Aliases : GTA02, GTA2, Zm00001e036210
Description : component SPT5 of SPT4/5 transcription elongation factor complex
Gene families : OG0002736 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002736_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Zm00001e036210_P001 | |
| Cluster | HCCA: Cluster_163 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00002p00250180 | GTA02, GTA2,... | RNA biosynthesis.RNA polymerase II-dependent... | 0.02 | OrthoFinder output from all 47 species | |
| AMTR_s00002p00251130 | SPT5L, KTF1,... | Chromatin organisation.DNA methylation.canonical... | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g020093 | GTA02, GTA2 | component *(SPT5) of SPT4/5 transcription elongation... | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g11309 | GTA02, GTA2 | component *(SPT5) of SPT4/5 transcription elongation... | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g07106 | GTA02, GTA2 | component *(SPT5) of SPT4/5 transcription elongation... | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0078.g038202 | GTA02, GTA2 | component *(SPT5) of SPT4/5 transcription elongation... | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g04715 | GTA02, GTA2 | component *(SPT5) of SPT4/5 transcription elongation... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.26G072300.1 | GTA02, GTA2,... | component *(SPT5) of SPT4/5 transcription elongation... | 0.07 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00001094.2 | GTA02, GTA2 | Putative transcription elongation factor SPT5 homolog 1... | 0.02 | OrthoFinder output from all 47 species | |
| Cre01.g031050 | GTA02, GTA2 | RNA biosynthesis.RNA polymerase II-dependent... | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g08962 | GTA02, GTA2 | component *(SPT5) of SPT4/5 transcription elongation... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01010022001 | GTA02, GTA2 | RNA biosynthesis.RNA polymerase II-dependent... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01016203001 | SPT5L, KTF1 | Chromatin organisation.DNA methylation.canonical... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_37075 | GTA02, GTA2 | RNA polymerase-V auxiliary factor (KTF1/SPT5L).... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os05g43060.1 | SPT5L, KTF1,... | RNA polymerase-V auxiliary factor (KTF1/SPT5L) | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os06g10620.1 | GTA02, GTA2,... | component SPT5 of SPT4/5 transcription elongation factor complex | 0.08 | OrthoFinder output from all 47 species | |
| Len_g12137 | GTA02, GTA2 | component *(SPT5) of SPT4/5 transcription elongation... | 0.05 | OrthoFinder output from all 47 species | |
| Lfl_g05703 | GTA02, GTA2 | component *(SPT5) of SPT4/5 transcription elongation... | 0.06 | OrthoFinder output from all 47 species | |
| MA_10434986g0010 | GTA02, GTA2 | RNA polymerase-V auxiliary factor (KTF1/SPT5L).... | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g23875 | GTA02, GTA2 | component *(SPT5) of SPT4/5 transcription elongation... | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g19192 | GTA02, GTA2 | component *(SPT5) of SPT4/5 transcription elongation... | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g18253 | GTA02, GTA2 | component *(SPT5) of SPT4/5 transcription elongation... | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g52300 | GTA02, GTA2 | component *(SPT5) of SPT4/5 transcription elongation... | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g37710 | No alias | component *(SPT5) of SPT4/5 transcription elongation... | 0.03 | OrthoFinder output from all 47 species | |
| Smo449156 | GTA02, GTA2 | RNA biosynthesis.RNA polymerase II-dependent... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc04g064700.4.1 | GTA02, GTA2,... | component SPT5 of SPT4/5 transcription elongation factor complex | 0.07 | OrthoFinder output from all 47 species | |
| Solyc11g008150.3.1 | SPT5L, KTF1,... | RNA polymerase-V auxiliary factor (KTF1/SPT5L) | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g04271 | GTA02, GTA2 | component *(SPT5) of SPT4/5 transcription elongation... | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005488 | binding | IEP | HCCA |
| BP | GO:0006354 | DNA-templated transcription elongation | IEP | HCCA |
| BP | GO:0006368 | transcription elongation by RNA polymerase II | IEP | HCCA |
| CC | GO:0008023 | transcription elongation factor complex | IEP | HCCA |
| BP | GO:0016570 | histone modification | IEP | HCCA |
| CC | GO:0016593 | Cdc73/Paf1 complex | IEP | HCCA |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
| BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0036211 | protein modification process | IEP | HCCA |
| BP | GO:0043412 | macromolecule modification | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| No external refs found! |