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  5. Zm00001e035979_P001

Zm00001e035979_P001 (MSI1, MEE70, ATMSI1,...)


Aliases : MSI1, MEE70, ATMSI1, Zm00001e035979

Description : component CAF1c/MSI of CAF1 histone chaperone complex


Gene families : OG0001615 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001615_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e035979_P001

Target Alias Description ECC score Gene Family Method Actions
AT2G16780 MSI2, NFC2, NFC02, MSI02 Transducin family protein / WD-40 repeat family protein 0.06 OrthoFinder output from all 47 species
AT4G35050 NFC3, MSI3 Transducin family protein / WD-40 repeat family protein 0.05 OrthoFinder output from all 47 species
Aop_g05698 MSI1, MEE70, ATMSI1 component *(MSI1) of PRC2 histone methylation complex &... 0.05 OrthoFinder output from all 47 species
Azfi_s0012.g012868 MSI1, MEE70, ATMSI1 component *(MSI1) of PRC2 histone methylation complex &... 0.03 OrthoFinder output from all 47 species
Ceric.19G012200.1 MSI1, MEE70,... component *(MSI1) of PRC2 histone methylation complex &... 0.08 OrthoFinder output from all 47 species
Cre12.g523200 MSI1, MEE70, ATMSI1 Chromatin organisation.histone modifications.histone... 0.04 OrthoFinder output from all 47 species
Cre13.g581750 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g08708 MSI1, MEE70, ATMSI1 component *(CAF1c/MSI) of CAF1 histone chaperone complex... 0.06 OrthoFinder output from all 47 species
Dac_g38232 MSI1, MEE70, ATMSI1 component *(MSI1) of PRC2 histone methylation complex &... 0.06 OrthoFinder output from all 47 species
Ehy_g02464 MSI1, MEE70, ATMSI1 component *(MSI1) of PRC2 histone methylation complex &... 0.02 OrthoFinder output from all 47 species
LOC_Os09g36900.1 MSI1, MEE70,... component CAF1c/MSI of CAF1 histone chaperone complex 0.04 OrthoFinder output from all 47 species
Len_g05275 MSI1, MEE70, ATMSI1 component *(MSI1) of PRC2 histone methylation complex &... 0.03 OrthoFinder output from all 47 species
Lfl_g07946 MSI1, MEE70, ATMSI1 component *(MSI1) of PRC2 histone methylation complex &... 0.02 OrthoFinder output from all 47 species
MA_70799g0010 MSI1, MEE70, ATMSI1 component CAF1c/MSI of CAF1 histone chaperone complex 0.03 OrthoFinder output from all 47 species
Mp4g21020.1 MSI1, MEE70, ATMSI1 component CAF1c/MSI of CAF1 histone chaperone complex.... 0.02 OrthoFinder output from all 47 species
Nbi_g09174 MSI1, MEE70, ATMSI1 component *(MSI1) of PRC2 histone methylation complex &... 0.03 OrthoFinder output from all 47 species
Sam_g02081 No alias component *(MSI3) of ISWI chromatin remodeling complex &... 0.03 OrthoFinder output from all 47 species
Sam_g11292 No alias component *(MSI1) of PRC2 histone methylation complex &... 0.04 OrthoFinder output from all 47 species
Smo233646 MSI1, MEE70, ATMSI1 Chromatin organisation.histone modifications.histone... 0.04 OrthoFinder output from all 47 species
Solyc01g104510.3.1 MSI1, MEE70,... component CAF1c/MSI of CAF1 histone chaperone complex.... 0.02 OrthoFinder output from all 47 species
Solyc01g111590.4.1 MSI2, NFC2,... component CAF1c/MSI of CAF1 histone chaperone complex 0.08 OrthoFinder output from all 47 species
Tin_g09251 MSI1, MEE70, ATMSI1 component *(MSI1) of PRC2 histone methylation complex &... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR022052 Histone-bd_RBBP4_N 23 87
IPR001680 WD40_repeat 294 331
IPR001680 WD40_repeat 208 244
IPR001680 WD40_repeat 352 387
IPR001680 WD40_repeat 181 195
IPR001680 WD40_repeat 252 287
No external refs found!