Aliases : Zm00001e034437
Description : tRNA cytidine-methyltransferase (TRM4)
Gene families : OG0003443 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003443_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Zm00001e034437_P004 | |
Cluster | HCCA: Cluster_183 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00008p00028880 | evm_27.TU.AmTr_v1... | RNA processing.RNA modification.rRNA/tRNA... | 0.03 | OrthoFinder output from all 47 species | |
AT2G22400 | No alias | S-adenosyl-L-methionine-dependent methyltransferases... | 0.15 | OrthoFinder output from all 47 species | |
Adi_g022731 | No alias | EC_2.1 transferase transferring one-carbon group &... | 0.03 | OrthoFinder output from all 47 species | |
Ala_g19092 | No alias | EC_2.1 transferase transferring one-carbon group &... | 0.03 | OrthoFinder output from all 47 species | |
Als_g02576 | No alias | EC_2.1 transferase transferring one-carbon group &... | 0.02 | OrthoFinder output from all 47 species | |
Aob_g02263 | No alias | EC_2.1 transferase transferring one-carbon group &... | 0.02 | OrthoFinder output from all 47 species | |
Aspi01Gene05702.t1 | Aspi01Gene05702 | EC_2.1 transferase transferring one-carbon group &... | 0.04 | OrthoFinder output from all 47 species | |
Azfi_s0016.g014403 | No alias | EC_2.1 transferase transferring one-carbon group &... | 0.07 | OrthoFinder output from all 47 species | |
Ceric.01G076100.1 | Ceric.01G076100 | EC_2.1 transferase transferring one-carbon group &... | 0.06 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00020562.25 | No alias | RNA processing.RNA modification.rRNA/tRNA... | 0.07 | OrthoFinder output from all 47 species | |
Cre03.g179860 | No alias | RNA processing.RNA modification.rRNA/tRNA... | 0.13 | OrthoFinder output from all 47 species | |
Dcu_g13064 | No alias | EC_2.1 transferase transferring one-carbon group &... | 0.05 | OrthoFinder output from all 47 species | |
Ehy_g13681 | No alias | EC_2.1 transferase transferring one-carbon group &... | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01003416001 | No alias | RNA processing.RNA modification.rRNA/tRNA... | 0.05 | OrthoFinder output from all 47 species | |
Gb_17436 | No alias | tRNA cytidine-methyltransferase (TRM4) | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os09g29630.1 | LOC_Os09g29630 | tRNA cytidine-methyltransferase (TRM4) | 0.2 | OrthoFinder output from all 47 species | |
Len_g57891 | No alias | EC_2.1 transferase transferring one-carbon group &... | 0.05 | OrthoFinder output from all 47 species | |
Lfl_g16441 | No alias | EC_2.1 transferase transferring one-carbon group &... | 0.05 | OrthoFinder output from all 47 species | |
Mp3g05200.1 | No alias | tRNA cytidine-methyltransferase (TRM4) | 0.12 | OrthoFinder output from all 47 species | |
Ppi_g14450 | No alias | EC_2.1 transferase transferring one-carbon group &... | 0.02 | OrthoFinder output from all 47 species | |
Sam_g49641 | No alias | EC_2.1 transferase transferring one-carbon group &... | 0.1 | OrthoFinder output from all 47 species | |
Smo418525 | No alias | RNA processing.RNA modification.rRNA/tRNA... | 0.1 | OrthoFinder output from all 47 species | |
Solyc05g051520.3.1 | Solyc05g051520 | tRNA cytidine-methyltransferase (TRM4) | 0.21 | OrthoFinder output from all 47 species | |
Tin_g45505 | No alias | EC_2.1 transferase transferring one-carbon group &... | 0.06 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008168 | methyltransferase activity | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | HCCA |
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003682 | chromatin binding | IEP | HCCA |
MF | GO:0003723 | RNA binding | IEP | HCCA |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
MF | GO:0004176 | ATP-dependent peptidase activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
MF | GO:0005515 | protein binding | IEP | HCCA |
MF | GO:0005524 | ATP binding | IEP | HCCA |
CC | GO:0005634 | nucleus | IEP | HCCA |
CC | GO:0005732 | sno(s)RNA-containing ribonucleoprotein complex | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
BP | GO:0006364 | rRNA processing | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0008033 | tRNA processing | IEP | HCCA |
BP | GO:0008152 | metabolic process | IEP | HCCA |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
MF | GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | IEP | HCCA |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
MF | GO:0017150 | tRNA dihydrouridine synthase activity | IEP | HCCA |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
CC | GO:0030684 | preribosome | IEP | HCCA |
CC | GO:0032040 | small-subunit processome | IEP | HCCA |
MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
CC | GO:0034457 | Mpp10 complex | IEP | HCCA |
BP | GO:0034470 | ncRNA processing | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
MF | GO:0036094 | small molecule binding | IEP | HCCA |
MF | GO:0043167 | ion binding | IEP | HCCA |
MF | GO:0043168 | anion binding | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
CC | GO:0043227 | membrane-bounded organelle | IEP | HCCA |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | HCCA |
BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
BP | GO:0044238 | primary metabolic process | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
MF | GO:0106413 | dihydrouridine synthase activity | IEP | HCCA |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001678 | MeTrfase_RsmB/NOP2 | 178 | 363 |
No external refs found! |