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  5. Zm00001e034314_P001

Zm00001e034314_P001 (MS1, Zm00001e034314)


Aliases : MS1, Zm00001e034314

Description : MMD1/DUET meiotic recombination regulating protein. PHD finger transcription factor


Gene families : OG0003400 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003400_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e034314_P001
Cluster HCCA: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00102300 MS1,... RNA biosynthesis.transcriptional activation.PHD finger... 0.02 OrthoFinder output from all 47 species
AMTR_s00024p00102840 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
Ceric.25G054900.1 MMD1, Ceric.25G054900 transcriptional regulator *(MS1) & original description:... 0.02 OrthoFinder output from all 47 species
GSVIVT01011588001 MS1 RNA biosynthesis.transcriptional activation.PHD finger... 0.15 OrthoFinder output from all 47 species
GSVIVT01030666001 MMD1 RNA biosynthesis.transcriptional activation.PHD finger... 0.05 OrthoFinder output from all 47 species
LOC_Os09g27620.1 MS1, LOC_Os09g27620 MMD1/DUET meiotic recombination regulating protein. PHD... 0.18 OrthoFinder output from all 47 species
Mp3g06700.1 MMD1 PHD finger transcription factor 0.02 OrthoFinder output from all 47 species
Ore_g40819 MMD1 transcriptional regulator *(MS1) & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0168.g024273 MS1 transcriptional regulator *(MS1) & original description:... 0.03 OrthoFinder output from all 47 species
Sam_g48354 No alias PHD finger transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Solyc04g008420.1.1 MS1, Solyc04g008420 MMD1/DUET meiotic recombination regulating protein. PHD... 0.2 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 614 660
No external refs found!