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  5. Zm00001e033939_P001

Zm00001e033939_P001 (Zm00001e033939)


Aliases : Zm00001e033939

Description : CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Zea mays (sp|a7xn92|cfm3_maize : 529.0)


Gene families : OG0001162 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001162_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e033939_P001
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00265220 ATCFM3A, CFM3A,... RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
AMTR_s00028p00245370 ATCFM2, CFM2,... RNA processing.organelle machineries.RNA... 0.05 OrthoFinder output from all 47 species
AMTR_s00045p00114550 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.06 OrthoFinder output from all 47 species
AMTR_s00079p00107040 EMB1865,... CRM-domain containing factor CFM3,... 0.08 OrthoFinder output from all 47 species
AT3G01370 ATCFM2, CFM2 CRM family member 2 0.09 OrthoFinder output from all 47 species
AT3G18390 EMB1865 CRS1 / YhbY (CRM) domain-containing protein 0.06 OrthoFinder output from all 47 species
AT3G23070 ATCFM3A, CFM3A CRM family member 3A 0.09 OrthoFinder output from all 47 species
AT4G29750 No alias CRS1 / YhbY (CRM) domain-containing protein 0.06 OrthoFinder output from all 47 species
AT5G16180 ATCRS1, CRS1 ortholog of maize chloroplast splicing factor CRS1 0.05 OrthoFinder output from all 47 species
Adi_g022878 ATCFM3A, CFM3A not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g27469 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03895 ATCFM3A, CFM3A not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g17963 ATCFM2, CFM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g19644 ATCFM2, CFM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g25751 ATCFM2, CFM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0004.g008527 ATCFM2, CFM2 not classified & original description: CDS=155-3025 0.04 OrthoFinder output from all 47 species
Azfi_s0015.g013833 ATCFM2, CFM2 not classified & original description: CDS=1-3243 0.02 OrthoFinder output from all 47 species
Azfi_s0203.g057681 ATCFM2, CFM2 not classified & original description: CDS=1647-4091 0.03 OrthoFinder output from all 47 species
Azfi_s1010.g095172 EMB1865 not classified & original description: CDS=6-3158 0.04 OrthoFinder output from all 47 species
Cba_g10843 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g11329 ATCFM2, CFM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.05G053300.1 ATCFM2, CFM2,... not classified & original description: pacid=50577844... 0.06 OrthoFinder output from all 47 species
Ceric.23G047600.1 ATCFM2, CFM2,... not classified & original description: pacid=50611491... 0.07 OrthoFinder output from all 47 species
Ceric.31G056300.1 ATCFM2, CFM2,... not classified & original description: pacid=50573909... 0.09 OrthoFinder output from all 47 species
Dac_g20553 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g30925 EMB1865 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g07763 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g13607 ATCFM3A, CFM3A not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g18891 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25274 ATCFM2, CFM2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g12628 EMB1865 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ehy_g21472 ATCFM2, CFM2 plastidial RNA splicing factor *(CFM2) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01008296001 EMB1865 CRM-domain containing factor CFM3,... 0.1 OrthoFinder output from all 47 species
GSVIVT01015193001 No alias RNA processing.organelle machineries.RNA... 0.06 OrthoFinder output from all 47 species
GSVIVT01018109001 ATCFM3A, CFM3A RNA processing.organelle machineries.RNA... 0.05 OrthoFinder output from all 47 species
GSVIVT01031001001 ATCRS1, CRS1 RNA processing.organelle machineries.RNA... 0.07 OrthoFinder output from all 47 species
GSVIVT01032542001 ATCFM2, CFM2 RNA processing.organelle machineries.RNA... 0.08 OrthoFinder output from all 47 species
Gb_18301 ATCFM2, CFM2 CRM-domain containing factor CFM2, chloroplastic... 0.03 OrthoFinder output from all 47 species
Gb_18303 ATCFM2, CFM2 CRM-domain containing factor CFM2, chloroplastic... 0.06 OrthoFinder output from all 47 species
Gb_37638 ATCFM3A, CFM3A CFM2-type plastidial RNA splicing factor. CFM3-type... 0.07 OrthoFinder output from all 47 species
Gb_39217 EMB1865 CFM2-type plastidial RNA splicing factor 0.03 OrthoFinder output from all 47 species
LOC_Os04g39060.2 ATCFM2, CFM2,... CRM-domain containing factor CFM2, chloroplastic... 0.03 OrthoFinder output from all 47 species
LOC_Os05g47850.1 EMB1865, LOC_Os05g47850 CRM-domain containing factor CFM3,... 0.11 OrthoFinder output from all 47 species
LOC_Os08g27150.1 ATCRS1, CRS1,... CRS1 plastidial RNA splicing factor 0.04 OrthoFinder output from all 47 species
LOC_Os09g19850.1 LOC_Os09g19850 CRM-domain containing factor CFM3,... 0.09 OrthoFinder output from all 47 species
LOC_Os11g37990.1 ATCFM3A, CFM3A,... CFM3-type plastidial RNA splicing factor 0.04 OrthoFinder output from all 47 species
Len_g08834 ATCFM2, CFM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g55562 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g03478 ATCFM2, CFM2 plastidial RNA splicing factor *(CFM2) & original... 0.03 OrthoFinder output from all 47 species
Lfl_g05744 ATCFM3A, CFM3A not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10233916g0010 ATCFM2, CFM2 CRM-domain containing factor CFM2, chloroplastic... 0.02 OrthoFinder output from all 47 species
MA_10432072g0010 ATCFM3A, CFM3A CFM2-type plastidial RNA splicing factor 0.05 OrthoFinder output from all 47 species
MA_10435740g0010 EMB1865 CFM2-type plastidial RNA splicing factor 0.04 OrthoFinder output from all 47 species
MA_8161870g0010 ATCFM2, CFM2 CRM-domain containing factor CFM2, chloroplastic... 0.04 OrthoFinder output from all 47 species
Mp3g06280.1 ATCFM2, CFM2 CRM-domain containing factor CFM3,... 0.07 OrthoFinder output from all 47 species
Msp_g43371 ATCFM2, CFM2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g10122 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g17170 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g25479 ATCFM2, CFM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g35546 ATCFM2, CFM2 plastidial RNA splicing factor *(CFM2) & original... 0.03 OrthoFinder output from all 47 species
Pir_g18629 ATCFM2, CFM2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g29461 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g46980 ATCFM3A, CFM3A not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0030.g010428 ATCFM3A, CFM3A not classified & original description: CDS=119-3697 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0160.g023856 ATCFM2, CFM2 not classified & original description: CDS=91-3327 0.04 OrthoFinder output from all 47 species
Sam_g08382 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g52089 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo120007 No alias CRM-domain containing factor CFM3,... 0.04 OrthoFinder output from all 47 species
Smo20706 EMB1865 CRM-domain containing factor CFM3,... 0.03 OrthoFinder output from all 47 species
Smo412905 No alias CRM-domain containing factor CFM3,... 0.03 OrthoFinder output from all 47 species
Solyc03g119450.3.1 EMB1865, Solyc03g119450 CRM-domain containing factor CFM3,... 0.08 OrthoFinder output from all 47 species
Solyc07g039500.4.1 Solyc07g039500 CRM-domain containing factor CFM3,... 0.08 OrthoFinder output from all 47 species
Solyc09g083350.3.1 ATCFM3A, CFM3A,... CFM3-type plastidial RNA splicing factor 0.11 OrthoFinder output from all 47 species
Spa_g04443 ATCFM2, CFM2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g09433 ATCFM2, CFM2 not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
BP GO:0017038 protein import IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:2001070 starch binding IEP HCCA
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 555 639
IPR001890 RNA-binding_CRM 358 440
IPR001890 RNA-binding_CRM 769 855
No external refs found!