Zm00001e032938_P001 (Zm00001e032938)


Aliases : Zm00001e032938

Description : component RPL4 of LSU proteome component


Gene families : OG0002398 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002398_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e032938_P001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00023p00210590 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder output from all 47 species
AMTR_s00105p00023120 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 OrthoFinder output from all 47 species
AT3G09630 No alias Ribosomal protein L4/L1 family 0.13 OrthoFinder output from all 47 species
AT5G02870 No alias Ribosomal protein L4/L1 family 0.17 OrthoFinder output from all 47 species
Ala_g04140 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g12528 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Aspi01Gene66463.t1 Aspi01Gene66463 component *(uL4) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ceric.07G041200.1 Ceric.07G041200 component *(uL4) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Ceric.18G033500.1 Ceric.18G033500 component *(uL4) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00022075.53 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 OrthoFinder output from all 47 species
Cre09.g397697 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 OrthoFinder output from all 47 species
Dac_g17142 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Dcu_g06226 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Dcu_g25869 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Dde_g12036 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
GSVIVT01025547001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder output from all 47 species
Gb_00290 No alias component RPL4 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Gb_21884 No alias component RPL4 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Gb_21885 No alias component RPL4 of LSU proteome component 0.04 OrthoFinder output from all 47 species
LOC_Os03g58204.1 LOC_Os03g58204 component RPL4 of LSU proteome component 0.17 OrthoFinder output from all 47 species
LOC_Os07g08330.1 LOC_Os07g08330 component RPL4 of LSU proteome component 0.18 OrthoFinder output from all 47 species
Lfl_g03904 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g29160 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
MA_9991417g0010 No alias component RPL4 of LSU proteome component 0.08 OrthoFinder output from all 47 species
Mp4g20310.1 No alias component RPL4 of LSU proteome component 0.13 OrthoFinder output from all 47 species
Msp_g01521 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Nbi_g16964 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Ore_g24610 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pp3c23_9380V3.1 Pp3c23_9380 Ribosomal protein L4/L1 family 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008375 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Sam_g13131 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g13132 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Sam_g25486 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Solyc09g007250.4.1 Solyc09g007250 component RPL4 of LSU proteome component 0.1 OrthoFinder output from all 47 species
Solyc10g084350.2.1 Solyc10g084350 component RPL4 of LSU proteome component 0.16 OrthoFinder output from all 47 species
Solyc10g086010.2.1 Solyc10g086010 component RPL4 of LSU proteome component 0.15 OrthoFinder output from all 47 species
Spa_g04220 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Spa_g43372 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Tin_g14297 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Tin_g26524 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002136 Ribosomal_L4/L1e 26 266
IPR025755 Ribos_L4_C_dom 279 352
No external refs found!