Aliases : Zm00001e032753
Description : Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana (sp|q8w034|rnp1_arath : 125.0)
Gene families : OG0000120 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000120_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Zm00001e032753_P002 | |
Cluster | HCCA: Cluster_147 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00088p00174110 | evm_27.TU.AmTr_v1... | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana | 0.04 | OrthoFinder output from all 47 species | |
Adi_g064547 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Adi_g081639 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Adi_g107999 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Aop_g03820 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aspi01Gene21770.t1 | Aspi01Gene21770 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aspi01Gene41903.t1 | Aspi01Gene41903 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0390.g067677 | No alias | not classified & original description: CDS=363-1799 | 0.03 | OrthoFinder output from all 47 species | |
Cba_g15473 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Cre07.g330300 | No alias | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana | 0.01 | OrthoFinder output from all 47 species | |
Gb_16979 | No alias | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os08g38410.1 | LOC_Os08g38410 | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
MA_4551106g0010 | No alias | no hits & (original description: none) | 0.04 | OrthoFinder output from all 47 species | |
MpVg00970.1 | No alias | No annotation | 0.03 | OrthoFinder output from all 47 species | |
Ore_g03296 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Pir_g09717 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Pp3c4_17440V3.1 | Pp3c4_17440 | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.01 | OrthoFinder output from all 47 species | |
Sam_g07384 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Sam_g50608 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001510 | RNA methylation | IEP | HCCA |
MF | GO:0005509 | calcium ion binding | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
BP | GO:0006400 | tRNA modification | IEP | HCCA |
BP | GO:0006486 | protein glycosylation | IEP | HCCA |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0007034 | vacuolar transport | IEP | HCCA |
BP | GO:0008033 | tRNA processing | IEP | HCCA |
BP | GO:0008150 | biological_process | IEP | HCCA |
BP | GO:0008152 | metabolic process | IEP | HCCA |
MF | GO:0008168 | methyltransferase activity | IEP | HCCA |
MF | GO:0008173 | RNA methyltransferase activity | IEP | HCCA |
MF | GO:0008175 | tRNA methyltransferase activity | IEP | HCCA |
MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | HCCA |
BP | GO:0009451 | RNA modification | IEP | HCCA |
BP | GO:0009987 | cellular process | IEP | HCCA |
MF | GO:0016426 | tRNA (adenine) methyltransferase activity | IEP | HCCA |
MF | GO:0016429 | tRNA (adenine-N1-)-methyltransferase activity | IEP | HCCA |
MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | HCCA |
BP | GO:0019538 | protein metabolic process | IEP | HCCA |
MF | GO:0030246 | carbohydrate binding | IEP | HCCA |
BP | GO:0030488 | tRNA methylation | IEP | HCCA |
CC | GO:0031515 | tRNA (m1A) methyltransferase complex | IEP | HCCA |
BP | GO:0032259 | methylation | IEP | HCCA |
BP | GO:0034470 | ncRNA processing | IEP | HCCA |
BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
CC | GO:0034708 | methyltransferase complex | IEP | HCCA |
BP | GO:0036211 | protein modification process | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
BP | GO:0043412 | macromolecule modification | IEP | HCCA |
BP | GO:0043413 | macromolecule glycosylation | IEP | HCCA |
BP | GO:0043414 | macromolecule methylation | IEP | HCCA |
CC | GO:0043527 | tRNA methyltransferase complex | IEP | HCCA |
BP | GO:0044238 | primary metabolic process | IEP | HCCA |
BP | GO:0046907 | intracellular transport | IEP | HCCA |
BP | GO:0051641 | cellular localization | IEP | HCCA |
BP | GO:0051649 | establishment of localization in cell | IEP | HCCA |
BP | GO:0070085 | glycosylation | IEP | HCCA |
BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
CC | GO:1902494 | catalytic complex | IEP | HCCA |
CC | GO:1990234 | transferase complex | IEP | HCCA |
No external refs found! |